PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_6326342g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

MYB_related

Protein Properties

Length: 123aa MW: 13525.7 Da PI: 4.7312

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_6326342g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.6	2.8e-08	4	48	2	44
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 g W+ e + + a +++ + +W++Ia+ ++ g+++ ++k ++ MA_6326342g0010 4 GDWSREQNKAFEMALAKHLEDtddRWEKIASAVP-GKSPAEVKRHY 48 78***************99*********.********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	9.719	1	56	IPR017884	SANT domain
SMART	SM00717	2.5E-8	2	54	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.72E-11	4	59	IPR009057	Homeodomain-like
Pfam	PF00249	1.7E-6	4	48	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-5	5	58	IPR009057	Homeodomain-like
CDD	cd00167	4.63E-7	6	48	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 123 aa Download sequence Send to blast
MSNGDWSREQ NKAFEMALAK HLEDTDDRWE KIASAVPGKS PAEVKRHYEI LVEDIASIEA 60 GRVPIPSYLD EVAEQADDGT AKKGGTHSSA YANLPSESNG TGKGTSKSDQ ERRKGIPWTE 120 EEH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	2e-22	6	68	11	73	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269\|PubMed:26243618}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:26243618}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT116343	0.0	BT116343.1 Picea glauca clone GQ03716_N24 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010249027.1	6e-38	PREDICTED: transcription factor DIVARICATA-like isoform X1
Refseq	XP_010249034.1	6e-38	PREDICTED: transcription factor DIVARICATA-like isoform X1
Refseq	XP_010249041.1	6e-38	PREDICTED: transcription factor DIVARICATA-like isoform X1
Refseq	XP_010249048.1	6e-38	PREDICTED: transcription factor DIVARICATA-like isoform X1
Refseq	XP_019052501.1	4e-38	PREDICTED: transcription factor DIVARICATA-like isoform X2
Refseq	XP_027099997.1	6e-39	transcription factor SRM1-like
Swissprot	Q9FNN6	2e-30	SRM1_ARATH; Transcription factor SRM1
TrEMBL	B8LKB7	1e-83	B8LKB7_PICSI; Uncharacterized protein
STRING	ERN09373	3e-38	(Amborella trichopoda)
STRING	XP_010249027.1	2e-37	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP347	12	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	9e-33	MYB family protein

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313]