PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_635g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family TCP
Protein Properties Length: 483aa    MW: 51306.6 Da    PI: 7.9241
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_635g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.42.9e-391222443128
          TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaa.ksk 98 
                  +k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+ +  + s +ss+s      + ++   ++ 
  MA_635g0010 122 AKRSSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANIAsLNISTRSSSS------SISAPLkPPY 213
                  799****************************************************************977742222222222......2222222333 PP

          TCP  99 ksqksaasalnlakesrakararare.rtre 128
                  + + s + + n+a+   ++ r+r++  r +e
  MA_635g0010 214 FHSGSLNLNANFAARLDQQIRSRNEWeRAQE 244
                  3333333333333333344444433222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.7E-40126309IPR005333Transcription factor, TCP
PROSITE profilePS5136927.636127181IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MESHVDNGRT KFNLETGMQP LQLLSYDQEE QRMVGYNVQT ASNRQNQDDH GRSSLGSGYL  60
AQAALASSQV DSSLAMSAAK LYSNTETAIV IPKAHEQKTT SAAAAAAAAV QGTEDASKKP  120
LAKRSSTKDR HTKVDGRGRR IRMPATCAAR VFQLTRELGH KSDGETIEWL LQQAEPAVIA  180
ATGTGTIPAN IASLNISTRS SSSSISAPLK PPYFHSGSLN LNANFAARLD QQIRSRNEWE  240
RAQEERSGMN TGLGIGHHHT DSSGLTQALI HEQNLINDRA EINDLMNSEC GNSRKRLREE  300
QQQQQFKNMQ PMWAVTPATG LSSAGQNMPG TFWMLPPTPG VMGHAGPGSD PIWTFPASSG  360
GAMYRTSMSS GLHFMPRPIN LNSSSTSMGH VQFGSMLMQG PAGSGSGSGA GAGSGSASQQ  420
LPQTGLGLGG GGGSNETHLG MLAALNAAYN NRSMNNNSEH HQSMGSAGHN HADSGEDRRD  480
NSQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1172110.0BT117211.1 Picea glauca clone GQ03815_B13 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026381344.17e-76transcription factor TCP14-like
TrEMBLA0A0C9S2X31e-122A0A0C9S2X3_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_16820_1789 transcribed RNA sequence
TrEMBLA0A0D6QX941e-121A0A0D6QX94_ARACU; Uncharacterized protein
STRINGERN085354e-67(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP26991230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.14e-41TCP family protein