PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_63754g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 83aa    MW: 9342.47 Da    PI: 4.6439
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_63754g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.62.9e-08548344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT    +++ da + +  +   +W+++a+++  g++++++k ++
    MA_63754g0010  5 NWTWKQNKQFEDALAVYDEDtadRWDKVASMVD-GKSPEEVKAHY 48
                     8********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.527156IPR017884SANT domain
SMARTSM007177.5E-6254IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-5458IPR009057Homeodomain-like
PfamPF002493.3E-6548IPR001005SANT/Myb domain
CDDcd001675.19E-6548No hitNo description
SuperFamilySSF466893.25E-12559IPR009057Homeodomain-like
PfamPF014661.3E-43154IPR016072SKP1 component, dimerisation
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006511Biological Processubiquitin-dependent protein catabolic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
MAATNWTWKQ NKQFEDALAV YDEDTADRWD KVASMVDGKS PEEVKAHYDI LVEDIERIEA  60
GLVPIPIYKS SDSKIPGSKS KKG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-256751180RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021731579.11e-28protein RADIALIS-like 4
RefseqXP_021738626.11e-28protein RADIALIS-like 4
SwissprotQ1A1731e-25RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLD5ADC16e-28D5ADC1_PICSI; Uncharacterized protein
STRINGXP_010539897.12e-26(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3471298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.26e-28RAD-like 6