PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_64687g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NAC
Protein Properties Length: 347aa    MW: 38584.5 Da    PI: 9.5219
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_64687g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1652.7e-51121391128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                    lppGfrF Ptdeel+v+yL+kk ++++l++  +i++vd+yk++Pw+Lp+k   +ekewyfF++rd+ky++g+r+nra+ sgyWkatg dk++++  
  MA_64687g0010  12 LPPGFRFCPTDEELLVHYLCKKGASQSLPV-PIIADVDLYKYDPWQLPEKSLFGEKEWYFFTPRDRKYPNGSRPNRAAGSGYWKATGADKPICAIg 106
                    79****************************.88***************8777899*************************************9986 PP

            NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    +++ vg+kk Lvfy g+apkg+kt+W+mheyrl
  MA_64687g0010 107 GKKRVGIKKALVFYAGKAPKGSKTNWIMHEYRL 139
                    7778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.76E-649165IPR003441NAC domain
PROSITE profilePS5100560.26912165IPR003441NAC domain
PfamPF023653.7E-2613139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MGRRNAEAEL ELPPGFRFCP TDEELLVHYL CKKGASQSLP VPIIADVDLY KYDPWQLPEK  60
SLFGEKEWYF FTPRDRKYPN GSRPNRAAGS GYWKATGADK PICAIGGKKR VGIKKALVFY  120
AGKAPKGSKT NWIMHEYRLA DVSRPARKKG SLRLDDWVLC RIYNKKTSAE KLALEQNESS  180
MGVPMETIDE KEMVNQPSTS IEHSGIEHNS PSSDLLSKLG PSPTSHNGFP PRASPMNSNI  240
SLLNPDFFQN TTTPFSASTP KAPVQSTVFN PIPSSINHQW TNYNSTNLIS GLHTDSSSSK  300
PSSSSEPISE KEEVQSSFRL ENFSRERRSS EQLQIGKFLA GGAKIIV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-8641717174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008792531.11e-103NAC domain-containing protein 68-like isoform X2
SwissprotQ52QH46e-98NAC68_ORYSJ; NAC domain-containing protein 68
TrEMBLA0A0D6R3P91e-149A0A0D6R3P9_ARACU; Uncharacterized protein
STRINGGSMUA_Achr6P32330_0011e-100(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.12e-92NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Taga Y, et al.
    Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4.
    Plant Signal Behav, 2009. 4(8): p. 740-2
    [PMID:19820348]
  3. Xia N, et al.
    Characterization of a novel wheat NAC transcription factor gene involved in defense response against stripe rust pathogen infection and abiotic stresses.
    Mol. Biol. Rep., 2010. 37(8): p. 3703-12
    [PMID:20213512]
  4. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  5. Nakayama A, et al.
    Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice.
    BMC Plant Biol., 2013. 13: p. 150
    [PMID:24093634]
  6. Ootsubo Y,Hibino T,Wakazono T,Mukai Y,Che FS
    IREN, a novel EF-hand motif-containing nuclease, functions in the degradation of nuclear DNA during the hypersensitive response cell death in rice.
    Biosci. Biotechnol. Biochem., 2016. 80(4): p. 748-60
    [PMID:26766411]