PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_66505g0020
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family B3
Protein Properties Length: 558aa    MW: 61425.4 Da    PI: 7.5276
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_66505g0020genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.21.3e-123324092195
                    HH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS
             B3  21 kfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 
                    k ae h  +++ + ++ + +ed  ++r+W++++++  ++ks++y+l+ ++ +Fv++ngL+egDf+v++  ++ ++++++++
  MA_66505g0020 332 KEAEIHlpELEARDGISIAMEDiVTSRVWNLRYRFwpNNKSRMYLLE-NTGDFVRSNGLQEGDFIVIY--SDtKTGKYMIR 409
                    44544577777788999*****8899*******99777777777777.********************..44488888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.8E-5319414IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.3E-16330420IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-14331408IPR015300DNA-binding pseudobarrel domain
PfamPF023626.1E-9340409IPR003340B3 DNA binding domain
PROSITE profilePS508638.797349414IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MLHLLKLILA WVQNHHLQRK RKLYSSHQRA LNEAGMCTGT PASYNFSGMD YFNPWNSGGM  60
VQQQDHLQNG LYNDIPPSCT VPVYLNSGDP SMFGAMQGLP GSVDAIHAAK YRRIPIDDVA  120
AGSFRDVPNL VNGNAGFTNP NDCQTILQQS AVFDGTPWPA QMAAMLHQGS QNQQQAYCNS  180
SLQASQDHKY RFAASQSHLD YTNYRSPIPA ASTKEARKNR MARQRRSMSH HHHHQNRQWS  240
SSTAMPPPPE PPVVFIHSNA TPTSRHCESH PHAISTTNIH ANRSTSGLET RKTFKVFAAK  300
SSQAERRWQS RKDRAAQDAH NSIFASMYCA QKEAEIHLPE LEARDGISIA MEDIVTSRVW  360
NLRYRFWPNN KSRMYLLENT GDFVRSNGLQ EGDFIVIYSD TKTGKYMIRG VKVPRSDTTS  420
ASAAATPPTT TKSASGSCLI PDGEDAAAGT RVLKIGKSYG VPTSQAVGVT FADSMADASS  480
SSVSDATHPC SEGDPFLRDM INQFSPTKGP ENDNVPNLER FPSLDSGDLT IEEILDLVES  540
PDMADPGKSP DNIGESKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A2e-2732741720110B3 domain-containing transcription factor FUS3
6j9b_D2e-2732741720110B3 domain-containing transcription factor FUS3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1755760.0AF175576.1 Picea abies transcription factor viviparous 1 (vp1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ9FVK10.0Q9FVK1_PICAB; Transcription factor viviparous 1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7881766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.13e-44B3 family protein