PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_6700463g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C3H
Protein Properties Length: 83aa    MW: 8911.09 Da    PI: 8.4762
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_6700463g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.11.9e-10226327
                     S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                     +++C  ++rtG Cky   CkF+H++
  MA_6700463g0010  2 EKECASYMRTGSCKYAVHCKFHHPQ 26
                     679********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.441127IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-7226IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-6327IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4525IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
GEKECASYMR TGSCKYAVHC KFHHPQPATI VSGYASSGSP TTPASPYVHG PQLQGSPTYV  60
PVIFSPSQGV IPMLVWNNYQ VSP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1066601e-48BT106660.1 Picea glauca clone GQ03007_G17 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021912042.17e-19zinc finger CCCH domain-containing protein 3
TrEMBLA0A0D6R4111e-30A0A0D6R411_ARACU; Uncharacterized protein
STRINGVIT_14s0036g00380.t012e-18(Vitis vinifera)
STRINGevm.model.supercontig_346.13e-18(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12471750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.28e-14C3H family protein