PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_67707g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 249aa    MW: 27641 Da    PI: 5.7616
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_67707g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.96.8e-2063111355
            AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    y+GVr+++ +g+Wv+eIr+p++   ++r++lg+f+t+e+Aa+a++ a+ +l+g
  MA_67707g0010  63 YRGVRRRS-WGKWVSEIREPKK---KTRIWLGSFDTPEMAARAYDVAAFYLKG 111
                    9****887.**********854...6************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-1361111IPR001471AP2/ERF domain
SMARTSM003803.2E-3662126IPR001471AP2/ERF domain
PROSITE profilePS5103223.89462120IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-2062121IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-3062121IPR001471AP2/ERF domain
PRINTSPR003671.5E-106374IPR001471AP2/ERF domain
CDDcd000186.20E-3263122No hitNo description
PRINTSPR003671.5E-1085101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MQKSMDNGVS LVAETMLTSS TDTDSISKSA PTAKDGIETI RTQDEVNPLS PQNSRLKLQY  60
PAYRGVRRRS WGKWVSEIRE PKKKTRIWLG SFDTPEMAAR AYDVAAFYLK GKNQALLNFP  120
ELIDHFPQPI SSSPRHIQAA AVEAAVAFSS PSESAGKYAR SRDNNKGVKR RLRNLPVSNE  180
HAATSSSHQL SASADVGECL AMEEDLFESC NLFMDLAEAL LLPPPPLFSS DEVKVEEQKS  240
EEGFLWSDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-17591211173Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9LYD32e-37DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLD5ABJ62e-69D5ABJ6_PICSI; Uncharacterized protein
STRINGXP_006426907.16e-38(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-36ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]