PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_68801g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family Trihelix
Protein Properties Length: 313aa    MW: 34303 Da    PI: 9.2168
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_68801g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix36.31.4e-1130117286
       trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    W  + v +L+e + ++  +++ g lk ++W+++ + +     ++    ++ kqC++k enl++ryk +k+++ +r   ss ++++f++l+
  MA_68801g0010  30 WHPSTVSKLLESYGDKCATIK-GYLKIKDWDDIVRTVnvhcdASNIAPKTMKQCRDKVENLKRRYKLEKRRATNR-GLSSVHWSFFHKLD 117
                    99999********99998886.55999**********99998888889*************************98.788889******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.7E-1428119No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MGSVSEDEDE YGKGGAVVGG SASSVSRCEW HPSTVSKLLE SYGDKCATIK GYLKIKDWDD  60
IVRTVNVHCD ASNIAPKTMK QCRDKVENLK RRYKLEKRRA TNRGLSSVHW SFFHKLDEIM  120
AMATATATGS DKATSLLEAC QSSFELNQGV DCELPEGFAG ESMPPPPLMS MSMSMSDMVL  180
SVFAGADRGK GLVDNTGGVD CTLDDILNNV CSYSSKNNRR LDFQDSSSPE KQPPPKRKKS  240
SASNSPSVSK KRKGKSTNPI QSLADALVGF SEVYARIEIA KMEMFTKLVL ELAKLRTKRK  300
KRSHSPSIPS DPK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236252RKKSSASNSPSVSKKRK
2299303KKRSH
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1005490.0BT100549.1 Picea glauca clone GQ0024_O07 mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1163547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.14e-18Trihelix family protein