PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_68810g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family Trihelix
Protein Properties Length: 483aa    MW: 56491 Da    PI: 5.8667
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_68810g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix681.9e-21138217286
       trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    Wt++e+l+Li++r+e+e r+ +g +k  lW+e++++++  ++ r ++qC++kwe+l+  yk +++g ++r  e     p+f++l+
  MA_68810g0010 138 WTRSETLKLIRLRTELEPRFAKGGRKSELWDEIAEALQNDQICRDAQQCRDKWEKLAAGYKGVRDGVRDR--E---DNPFFEELH 217
                    ********************************************************************96..3...458999986 PP
2trihelix66.17.2e-21388467286
       trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    W++ evl+Li++r em++r+ ++ +++ lW+e +++++++g++r +kqC+ekw++l   yk + + +k+   +     py+ +l+
  MA_68810g0010 388 WKRAEVLQLIKIRAEMDSRFLESTRRGLLWDELAERLMAQGIKRDAKQCREKWDKLMAGYKDVVDDKKEA--NL---SPYYAELT 467
                    ******************************************************************9984..33...47888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.374130194IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.1E-5133193IPR009057Homeodomain-like
SMARTSM007170.002134196IPR001005SANT/Myb domain
PfamPF138375.2E-18136217No hitNo description
CDDcd122035.53E-22136201No hitNo description
PROSITE profilePS500907.631380444IPR017877Myb-like domain
SMARTSM007170.36384446IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-4384444IPR009057Homeodomain-like
PfamPF138374.7E-16386468No hitNo description
CDDcd122038.01E-23386450No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MTCARWHNTF DLCICCLVST IHSQSVDYST DEEREKREQV LCCRCLFFLL CVLLCWPLCD  60
IPSLCDQVQV QTVQYAISEA VSHPDSTYST QNSSNPDVKG LENDRLGMVE VEEEGDDYKK  120
KEKEKEKEKE HKKRSKNWTR SETLKLIRLR TELEPRFAKG GRKSELWDEI AEALQNDQIC  180
RDAQQCRDKW EKLAAGYKGV RDGVRDREDN PFFEELHILL SGKGSRRERG DKDHHEVQEL  240
ELPKGLLCET GRDSVISETE INTEKRSCDF RDEEEWEVEV MASKGKKRRR PRYVSVSDLS  300
AVKDLIETVI EKQQEFFKDL LETVERKEQM REQARQEKEE KWRAEERAER DMFNNAMMTL  360
TQKLVGASVF QNSSMDGNQA LKKRSRNWKR AEVLQLIKIR AEMDSRFLES TRRGLLWDEL  420
AERLMAQGIK RDAKQCREKW DKLMAGYKDV VDDKKEANLS PYYAELTAML GRQNGQLTIG  480
TIL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118133KKKEKEKEKEKEHKKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024395857.11e-140trihelix transcription factor GTL1-like
TrEMBLA0A2R6WAH21e-146A0A2R6WAH2_MARPO; Uncharacterized protein
STRINGPP1S224_109V6.11e-139(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1063658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.12e-15Trihelix family protein