PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_69787g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

Trihelix

Protein Properties

Length: 132aa MW: 14633.6 Da PI: 10.7986

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_69787g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	52	1.8e-16	53	120	14	86
trihelix 14 rremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 r eme+r+ +++++++lWee ++ + ++g++r kqC+ekw++l ++k + +g+++r s+ py+ +l+ MA_69787g0010 53 RAEMESRFAKSARRAALWEELAELLGAEGIKRDGKQCREKWDKLMAEFKDVSDGKRDR-----SESPYYAELT 120 789*****************************************************97.....3458999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd12203	5.34E-18	53	103	No hit	No description
Pfam	PF13837	8.8E-13	55	121	No hit	No description
PROSITE profile	PS50090	6.086	70	97	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 132 aa Download sequence Send to blast
MVTRGFAGLK NSNPNRPRGV LNRLITTLAQ LLLPSSAAVE GRRRGQRIGS ERRAEMESRF 60 AKSARRAALW EELAELLGAE GIKRDGKQCR EKWDKLMAEF KDVSDGKRDR SESPYYAELT 120 ATVGPGRSAE AG

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF083869	1e-131	EF083869.1 Picea sitchensis clone WS0291_D09 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024395857.1	3e-32	trihelix transcription factor GTL1-like
TrEMBL	A9NRE1	4e-46	A9NRE1_PICSI; Uncharacterized protein
STRING	PP1S224_109V6.1	1e-31	(Physcomitrella patens)