PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_7129732g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

Trihelix

Protein Properties

Length: 194aa MW: 23491.9 Da PI: 10.0502

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_7129732g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	82.6	5.1e-26	32	114	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +W +qe+++ i++r e+e+++ ++k++k+lWe ++ km+++g++rs++qCk+kw+nl +ryk +++e ++ ++cp+f++l+a MA_7129732g0010 32 QWGHQETREFIAIRAELEKDFTQTKRNKTLWEIIAGKMKSKGYRRSAEQCKCKWKNLVNRYKGKETSEPDN----GRQCPFFEELDA 114 7*****************************************************************984....678****985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.213	25	89	IPR017877	Myb-like domain
CDD	cd12203	8.32E-26	31	96	No hit	No description
Pfam	PF13837	2.3E-24	32	115	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MTAMAALPLQ SPSMDAEMNQ SQLKRKDDRI PQWGHQETRE FIAIRAELEK DFTQTKRNKT 60 LWEIIAGKMK SKGYRRSAEQ CKCKWKNLVN RYKGKETSEP DNGRQCPFFE ELDAIFKERE 120 RNMDRLLLES KVGMKPKEKV RRFKRLLGEK ISNDYSEDEE ERRLREREWR IAMEKLKKEW 180 VMKDQAWRER EDQT

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269\|PubMed:15044016}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF087039	0.0	EF087039.1 Picea sitchensis clone WS02818_C08 unknown mRNA.
GenBank	EF087781	0.0	EF087781.1 Picea sitchensis clone WS02749_G08 unknown mRNA.
GenBank	EF676912	0.0	EF676912.1 Picea sitchensis clone WS02757_M14 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024381970.1	3e-66	trihelix transcription factor GT-3b-like
Swissprot	Q9SDW0	1e-33	TGT3A_ARATH; Trihelix transcription factor GT-3a
TrEMBL	A9P2A3	1e-105	A9P2A3_PICSI; Uncharacterized protein
STRING	PP1S285_47V6.1	1e-65	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP2262	15	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01380.1	7e-36	Trihelix family protein