PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_71756g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C3H
Protein Properties Length: 242aa    MW: 25769.9 Da    PI: 8.2082
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_71756g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.63.8e-1283109127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    y+++ C+++++tG Ck+G +Ck++H++
  MA_71756g0010  83 YGQPDCQYYMKTGDCKFGTTCKYHHPK 109
                    899**********************96 PP
2zf-CCCH37.15.2e-12131154326
                    S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                    ++ C f++r+G+Ck+G+ CkF H+
  MA_71756g0010 131 QPACTFYSRYGICKFGPACKFDHP 154
                    789********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.44182110IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-682111IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-682109IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-983109IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-488109IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.605128156IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-6129155IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-9131154IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5131156IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MRVGFDPLMC AQGPLSPLLS PERHQQPLGT GIAYKSFQHS DSSASGVQSA VTPLVQVGSA  60
AMVLPTVQAQ PSVGQKESFP ERYGQPDCQY YMKTGDCKFG TTCKYHHPKE RVAQSPTCVL  120
SPIGLPLRSD QPACTFYSRY GICKFGPACK FDHPLAGVSY SPSSSSLSEQ PVAPYPRGSS  180
PTRMLVRSSS SENSQAALMV KGQSSRSEES ASFKHHSTTD GPVGVKETDT SNSVAAVLSE  240
SA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024373414.12e-55zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_024373415.12e-55zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_024373416.12e-55zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_024373417.18e-56zinc finger CCCH domain-containing protein ZFN-like isoform X2
SwissprotQ84W917e-43C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A0D6R4111e-91A0A0D6R411_ARACU; Uncharacterized protein
STRINGPP1S102_155V6.16e-55(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1375334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.24e-40C3H family protein