PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_7261g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 344aa    MW: 38811.1 Da    PI: 6.1609
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_7261g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.38.6e-191369146
                     TSSS-HHHHHHHHHHHHHTTTT............-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg............tWktIartmgkgRtlkqcksrwqk 46
                     rg W++eEde+l+++v+ +G g            +W+ Iar+++ gRt++++k++w++
     MA_7261g0010 13 RGLWSPEEDEKLIRYVTTHGHGcwsavpkqaglqRWAQIARHLP-GRTDNEVKNFWNS 69
                     788*****************************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.916875IPR017930Myb domain
SuperFamilySSF466893.9E-15880IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-121143IPR009057Homeodomain-like
SMARTSM007174.1E-151273IPR001005SANT/Myb domain
PfamPF002491.2E-151369IPR001005SANT/Myb domain
CDDcd001676.07E-141668No hitNo description
Gene3DG3DSA:1.10.10.602.1E-114472IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MGHRCCNKQK VKRGLWSPEE DEKLIRYVTT HGHGCWSAVP KQAGLQRWAQ IARHLPGRTD  60
NEVKNFWNSC MRKKLIAQGI DPRTHGVISE LEMHEHRTPT CSHEPSSGFQ DGSHRPNSDL  120
ALSGALLSGE ILSKFIDTRD SGLGENVGLP SYGLAPVNAW IDRFLSYEQG QILQEDMDFQ  180
LPFATKDQRD GNMNGKSEMT FHAQENNGNV EFSTFEPYFP FDQTLSAHVE QLDIGSSGHE  240
SHHPLIRPVN EEAAIRFNAD HHLHMNPPSL EANTKPMHVP KVCEIELNEF NSQQLQASNY  300
HQYQNQYLIS YSSSASSAYD EHNLDANLSL DSSIPIGIYF GMIK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1162730.0BT116273.1 Picea glauca clone GQ03715_B15 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.15e-43myb domain protein 67