PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_73173g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family GRAS
Protein Properties Length: 545aa    MW: 60444.2 Da    PI: 4.3431
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_73173g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS228.82.6e-701655431374
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    l +lL++cAea+s+g + la+ +L+rl+ l+sp+g++m+R+a y+ +AL   ++ ++ +  +      ++++  ++ l alkl++ + P+++++h+
  MA_73173g0010 165 LLHLLTACAEAISEGAQDLAEVILCRLRGLVSPTGSTMERVAYYLFNALVYSINMNSLGHLEPNDKGMSTSSAKEHFLGALKLLHVAYPYIRIGHF 260
                    579***************************************************9777777777777777777999999***************** PP

           GRAS  97 taNqaIleavege..erv..HiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.......skeeleetgerLakfAeelgvpfefnv 180
                    taNq Ileav+g   + v  HiiDfdi++G+QWp+L++aL s    +  +lRiT ++ ++++        +e  ++tg+rL+++Ae+lg+pf f+ 
  MA_73173g0010 261 TANQCILEAVAGTgrTNVgiHIIDFDIMEGMQWPPLMEALRSTGdYEIDHLRITSIKWADEDedddgvlYSECCKHTGRRLSEYAETLGIPFLFQE 356
                    ************95522255********************976658889*******99887788999999999**********************8 PP

           GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyysalfdslea 273
                          +   l++   + gE ++Vn++ ql ++++ + +++    e+L   ++l+P+vv+++      d  ++++F e f+ +l+   ++fdslea
  MA_73173g0010 357 T-----DLKGLKDVISDDGEIVIVNCMWQLPHMVKLRNKMQ--LLEFLVGTRHLNPEVVTLATGPhgNDSaERGDFIESFAGCLKDLCTIFDSLEA 445
                    3.....444557788999***************95555555..599***************97652133346779********************* PP

           GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg..yrve.eesgslvlgWkdrp 366
                    +lp++  +r++vEr+++g++ +  ++ + ++        ++  +   ++G+ + ++s+++++ ak+ l+ +++ g  y+ve   ++ lvl W + p
  MA_73173g0010 446 GLPEHGLARAMVERMFFGPAMSRRLMRSPES------GESNVVDIAVKCGYVEGTISNDNVMYAKYTLELCSGAGrcYEVElVGKNRLVLKWASTP 535
                    ************************9999887......33344688899************************77767999966699********** PP

           GRAS 367 LvsvSaWr 374
                    Lv vS W+
  MA_73173g0010 536 LVRVSTWK 543
                    *******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098532.102139520IPR005202Transcription factor GRAS
PfamPF035149.1E-68165543IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MQVIGSCMQE AGMGSYNSWF PEQEWDHVFN NPPDGITYDI GEGEQLMNVD LDAAEWSSWD  60
DLIIDVDING CSVDNTNPSL PEKLQAIEEH LMDVELQDGI NNFQEDAISS PRIDEAIVTN  120
SSCKSIETDN SGSSSVDIDH AGSHENRSSK DLNTMSDVEY KGLRLLHLLT ACAEAISEGA  180
QDLAEVILCR LRGLVSPTGS TMERVAYYLF NALVYSINMN SLGHLEPNDK GMSTSSAKEH  240
FLGALKLLHV AYPYIRIGHF TANQCILEAV AGTGRTNVGI HIIDFDIMEG MQWPPLMEAL  300
RSTGDYEIDH LRITSIKWAD EDEDDDGVLY SECCKHTGRR LSEYAETLGI PFLFQETDLK  360
GLKDVISDDG EIVIVNCMWQ LPHMVKLRNK MQLLEFLVGT RHLNPEVVTL ATGPHGNDSA  420
ERGDFIESFA GCLKDLCTIF DSLEAGLPEH GLARAMVERM FFGPAMSRRL MRSPESGESN  480
VVDIAVKCGY VEGTISNDNV MYAKYTLELC SGAGRCYEVE LVGKNRLVLK WASTPLVRVS  540
TWKSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-281655434375GRAS family transcription factor containing protein, expressed
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP68391319
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-54GRAS family protein