PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_733169g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 252aa    MW: 28513.3 Da    PI: 6.1027
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_733169g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.17.5e-0967109855
                     HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      Er+RR+++N  + +Lr+++P+ +      K++K +i   A+ Y+ +Lq
  MA_733169g0010  67 SERKRRKKLNATLYTLRSVVPQiS------KMDKQSIIGDAISYVLDLQ 109
                     6*********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.08759108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-1464123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-1065114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-666109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.49E-1066113No hitNo description
Gene3DG3DSA:4.10.280.107.6E-1367123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MDTRIQYAGE ILKSDYYEDQ NNKLWMDNMY EIAGHFDWDD SDPEIMGVSK PASKTNYVQA  60
VSKNLHSERK RRKKLNATLY TLRSVVPQIS KMDKQSIIGD AISYVLDLQT KIQEIDGEIE  120
GLCSSIKGED RTQISSDMIQ PNLEKRSTES GDAKKSVDKF KHGKVLEGKF VEICNAGKDG  180
IYHVRIECKK DAGLLVDLTR ALESVPLEIV NSNVCCFHEA IHCTLSVRSL ENVKAHKFED  240
MIHQTMTSDC SS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16774ERKRRKKL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6778710.0EF677871.1 Picea sitchensis clone WS02776_M23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LPT71e-151B8LPT7_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5571678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.35e-22bHLH family protein