PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_73870g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family GRAS
Protein Properties Length: 592aa    MW: 65946.9 Da    PI: 5.2156
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_73870g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS262.41.6e-802035852374
           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                    ++lL  cA a+++++  ++q+l++ l++las +gd+++Rlaa+ ++A  a++++       +lp+se  + + +   +al  f+evsP++++ + +
  MA_73870g0010 203 EQLLNPCAVAIANNNIVRIQHLIWVLHDLASVSGDANHRLAAHGLRAFTAKIMH----AGGTLPCSEFLSADPKLFHKALLKFHEVSPWYQLLYTI 294
                    689**************************************************9....778899999998887777788888************** PP

           GRAS  98 aNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlvakrle 187
                    aN+ +lea+e +  +++H+iD+++s+G+QWp++++aLa Rp+gpp  lR+T +++            +   +rL+++A++l++++e nv +a+ l+
  MA_73870g0010 295 ANRSLLEAFEDQtnKALHVIDIGVSHGIQWPTFIEALARRPAGPPsLLRLTIIADTLGApfsAGPPCNDFPNRLKRYAKSLNLDMEVNV-IAQPLD 389
                    **********9987999************************8888679*******55448888999**********************9.7***** PP

           GRAS 188 dleleeLrvkpgEalaVnlvlqlhrll..........desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                    +l+ e+L +k++Eala++ +++lh+ll          d+++++  +rd+++k++k+l+P v+ ++++++dh+ ++F erf +++++ + ++ds+++
  MA_73870g0010 390 SLTREALGIKEDEALAICAQFRLHQLLeegldknegkDNQLTSVPPRDKFIKFIKDLNPLVFFLSDNDIDHSFPDFIERFKNSVDHLWRFLDSTSV 485
                    ***************************9999888877666666669************************************************98 PP

           GRAS 274 klpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLv 368
                     +   + eer++vE e  +  +vn va  ga+r+er+e+  +W +r++e GF     s+k+ + ak++lrk++s+ +++  e+g++ l+Wk++p++
  MA_73870g0010 486 CFKGREcEERRMVEGE-AAMGLVNNVAYDGASRVERNESHLSWGNRVREGGFVCEIPSDKIIDCAKAMLRKHDSN-WEMRLEDGCISLCWKSHPVT 579
                    8876666*********.88999999************************************************66.899999************** PP

           GRAS 369 svSaWr 374
                    ++S W+
  MA_73870g0010 580 FCSLWK 585
                    *****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.691176566IPR005202Transcription factor GRAS
PfamPF035145.4E-78203585IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MAEGEECNGG YGSLLDWLDI GDESSSMDPF INGDSCPIAD QDHEDFWEAA LPAMDIHPET  60
QFVMEPSFSS NDSVAPTAHR GDAESFWAEP PLNDVEDSSK ITKKRKRTRV SGESTKGKLW  120
NVFENNAASP HTGESVDHGN HCLAPEIKLS SQLGAESDNQ LDLEATRNNS NNNNNSSNSN  180
NKGRSGGRQS SPPNLPKESR WAEQLLNPCA VAIANNNIVR IQHLIWVLHD LASVSGDANH  240
RLAAHGLRAF TAKIMHAGGT LPCSEFLSAD PKLFHKALLK FHEVSPWYQL LYTIANRSLL  300
EAFEDQTNKA LHVIDIGVSH GIQWPTFIEA LARRPAGPPS LLRLTIIADT LGAPFSAGPP  360
CNDFPNRLKR YAKSLNLDME VNVIAQPLDS LTREALGIKE DEALAICAQF RLHQLLEEGL  420
DKNEGKDNQL TSVPPRDKFI KFIKDLNPLV FFLSDNDIDH SFPDFIERFK NSVDHLWRFL  480
DSTSVCFKGR ECEERRMVEG EAAMGLVNNV AYDGASRVER NESHLSWGNR VREGGFVCEI  540
PSDKIIDCAK AMLRKHDSNW EMRLEDGCIS LCWKSHPVTF CSLWKPCLNE PT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B2e-391755864420Protein SHORT-ROOT
5b3h_E2e-391755864420Protein SHORT-ROOT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102107KKRKRT
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0835361e-174FJ083536.1 Pinus taeda isolate 7966 anonymous locus 0_8801_02 genomic sequence.
GenBankFJ0835441e-174FJ083544.1 Pinus taeda isolate 7963 anonymous locus 0_8801_02 genomic sequence.
GenBankFJ0835451e-174FJ083545.1 Pinus taeda isolate 7964 anonymous locus 0_8801_02 genomic sequence.
GenBankFJ0835481e-174FJ083548.1 Pinus taeda isolate 7965 anonymous locus 0_8801_02 genomic sequence.
GenBankFJ0835491e-174FJ083549.1 Pinus taeda isolate 7961 anonymous locus 0_8801_02 genomic sequence.
GenBankFJ0835501e-174FJ083550.1 Pinus taeda isolate 7960 anonymous locus 0_8801_02 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024183846.11e-122nodulation-signaling pathway 1 protein
TrEMBLA0A2R6W1111e-138A0A2R6W111_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP40821525
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.16e-95GRAS family protein