PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_7437390g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 190aa    MW: 22374.6 Da    PI: 6.5237
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_7437390g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.22.5e-073881855
                     HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                     +E+ RR+r++s   +L +llP+ +      Kl+     e++++YI++L+
  MA_7437390g0010 38 AEQLRRKRMKSLCIQLESLLPTtP-----AKLDRCGLFEETINYIRKLE 81
                     8*********************55.....9****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.52E-53085No hitNo description
PROSITE profilePS5088812.5383080IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-103192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-103294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-43686IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-53881IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
PSEVDLADLQ DYNDLQEKVW QDVDRMLKFS SKESQIFAEQ LRRKRMKSLC IQLESLLPTT  60
PAKLDRCGLF EETINYIRKL EENIHRLKRK RENLLAIQSG KTANENTKIK VAVEFYGREA  120
IISITSQRGP RQMWMILEEL ESHGLDVETS QLFTGEFFVH VFFHVNFRDY ISQDPAQIQT  180
SLECRLKLTY
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0859560.0EF085956.1 Picea sitchensis clone WS02715_B03 unknown mRNA.
GenBankEF0867280.0EF086728.1 Picea sitchensis clone WS02747_G23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NYK81e-129A9NYK8_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12261548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.11e-06bHLH family protein