PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_74653g0010

Common Name

WOX5

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

WOX

Protein Properties

Length: 247aa MW: 28203.9 Da PI: 5.9653

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_74653g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.5	3.6e-21	11	70	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+++L+el++ r+p+ae++++++++l +++ ++V++WFqN++a+e++ MA_74653g0010 11 SRWNPTAEQVTILKELYRGgMRTPTAEQIQQISSQLkrygKIEGKNVFYWFQNHKARERQ 70 7***************99************************************97 PP
2	Wus_type_Homeobox	117.1	8.2e-38	10	72	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +RW+Pt+eQ++iL+ely+ G+rtP++e+iq+i+++L++yGkie+kNVfyWFQN+kaRerqk+ MA_74653g0010 10 GSRWNPTAEQVTILKELYRGGMRTPTAEQIQQISSQLKRYGKIEGKNVFYWFQNHKARERQKR 72 68***********************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.754	6	71	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.82E-12	6	75	IPR009057	Homeodomain-like
SMART	SM00389	1.9E-5	8	75	IPR001356	Homeobox domain
Pfam	PF00046	9.1E-19	11	70	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.3E-8	11	70	IPR009057	Homeodomain-like
CDD	cd00086	1.95E-4	12	72	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MMITAQPASG SRWNPTAEQV TILKELYRGG MRTPTAEQIQ QISSQLKRYG KIEGKNVFYW 60 FQNHKARERQ KRRRYTIITD MLQQKPESDH WRREEAEDSS SSSQFGSLLC GNIELDAPDN 120 SSVLYASKTG SRNGTNRSLQ GRFSQQFHYN TCHMQLDKND PREEGEDDRD QMETLQLFPV 180 QGQAGSVKSE KENCSSCSGN DHNYCSSDNI SYSENNSGIR DPLELCLSSC VNETNNNSIM 240 WDFFAGH

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT356212	0.0	KT356212.1 Pinus pinaster WUSCHEL homeobox protein WOX5 (WOX5) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	R9R8K4	0.0	R9R8K4_PICAB; WUSCHEL homeobox protein WOX5

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5580	11	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18010.1	2e-32	WUSCHEL related homeobox 1

Publications ? help Back to Top
Hedman H,Zhu T,von Arnold S,Sohlberg JJ Analysis of the WUSCHEL-RELATED HOMEOBOX gene family in the conifer picea abies reveals extensive conservation as well as dynamic patterns. BMC Plant Biol., 2013. 13: p. 89 [PMID:23758772]