PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_747816g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family WOX
Protein Properties Length: 265aa    MW: 29613.4 Da    PI: 5.9647
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_747816g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox597.5e-1945105257
                     T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                     ++R+++++eq+++Le+ F++   +p ++e+++++++l    +L +++V++WFqN++ + k+
  MA_747816g0010  45 KPRWNPKPEQIRILESIFNSgMVNPPRDEIKRITAQLqefgQLADANVFYWFQNKKSRTKQ 105
                     89*****************99*************************************996 PP
2Wus_type_Homeobox111.25.8e-3644107265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +++RW+P+peQi+iLe++++sG+++P+++ei+rita+L+e+G++ d+NVfyWFQN+k+R +qkq
     MA_747816g0010  44 PKPRWNPKPEQIRILESIFNSGMVNPPRDEIKRITAQLQEFGQLADANVFYWFQNKKSRTKQKQ 107
                        689***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.14341106IPR001356Homeobox domain
SuperFamilySSF466892.69E-1241111IPR009057Homeodomain-like
SMARTSM003892.8E-643110IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-744112IPR009057Homeodomain-like
CDDcd000868.74E-844107No hitNo description
PfamPF000461.6E-1645105IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MTGALCLQLY LAVVAAADLK KCSAFLRFEV GTLSENEERN PPEPKPRWNP KPEQIRILES  60
IFNSGMVNPP RDEIKRITAQ LQEFGQLADA NVFYWFQNKK SRTKQKQRQL QSAESSKSSA  120
EISRTDQSKA IMEVANITDN SLQNSGESYF SIVPAAPFPA HQEHYHVQVN EEISNDRCNY  180
MQTVAAAAAR GGIFNEGAGE DFIYGRSISV LINDIPVEVP VGPINVRAIF GENAVLLHST  240
GHLVLVNEWG FTLECLQHGQ KYYVI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198104KKSRTKQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9446700.0GU944670.1 Picea abies putative wuschel homeobox protein WOX8/9 (wox8/9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028116149.15e-55WUSCHEL-related homeobox 9-like
TrEMBLD5LMH91e-135D5LMH9_PICAB; Putative wuschel homeobox protein WOX8/9
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP46971222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17810.29e-30WUSCHEL related homeobox 12