PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_75070g0010

Common Name

AP2L2

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

AP2

Protein Properties

Length: 371aa MW: 41167.2 Da PI: 8.7546

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_75070g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	43.2	9.5e-14	42	92	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++e+Aa+a+++a+ + +g MA_75070g0010 42 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEEDAARAYDKAAIRCNG 92 89******.7**5553..2.26********************98766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	2.64E-26	42	102	No hit	No description
SuperFamily	SSF54171	1.31E-17	42	101	IPR016177	DNA-binding domain
Pfam	PF00847	4.3E-9	42	92	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	16.028	43	100	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.4E-16	43	100	IPR001471	AP2/ERF domain
SMART	SM00380	4.8E-33	43	106	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.3E-6	44	55	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.3E-6	82	102	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MKSRLVPTHS LLLSIIQTSK LSKEEFVHIL RRQSTGFSRG SSKYRGVTLH KCGRWEARMG 60 QFLGKKYIYL GLFDSEEDAA RAYDKAAIRC NGKDAVTNFD PSSYENEILE EGRESQTSTG 120 FDQNLDLSLG IGHVTTQLKI SPSYKSRVEE DSQLNRIEAV TYSNLSQDSK ILSCLTSKGA 180 ENAVPEFQSL PRGHAVYWNS QTLQVPDAMK HKQSHTREDN AYEQTAISGS QLYPDHLSNC 240 KRLNMEGLKE QSLGVPSSTV SFWPMKQQSG WTWQLHASGP TTPVFTTNRS PASGFSPQIH 300 TAFVPSTHGC HKMGVHWAAQ STDPCMVQTP SPHLATRLTS GPDSGDHPVG LTLDLPGKKI 360 KRSSVQRDKV D

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MKSRLVPTHS LLLSIIQTSK LSKEEFVHIL RRQSTGFSRG SSKYRGVTLH KCGRWEARMG  60
QFLGKKYIYL GLFDSEEDAA RAYDKAAIRC NGKDAVTNFD PSSYENEILE EGRESQTSTG  120
FDQNLDLSLG IGHVTTQLKI SPSYKSRVEE DSQLNRIEAV TYSNLSQDSK ILSCLTSKGA  180
ENAVPEFQSL PRGHAVYWNS QTLQVPDAMK HKQSHTREDN AYEQTAISGS QLYPDHLSNC  240
KRLNMEGLKE QSLGVPSSTV SFWPMKQQSG WTWQLHASGP TTPVFTTNRS PASGFSPQIH  300
TAFVPSTHGC HKMGVHWAAQ STDPCMVQTP SPHLATRLTS GPDSGDHPVG LTLDLPGKKI  360
KRSSVQRDKV D

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF253971	0.0	AF253971.1 Picea abies APETALA2-related transcription factor 2 (AP2L2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	Q9FV33	0.0	Q9FV33_PICAB; APETALA2-related transcription factor 2

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP497	17	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.2	2e-55	AP2 family protein

Publications ? help Back to Top
Vahala T,Oxelman B,von Arnold S Two APETALA2-like genes of Picea abies are differentially expressed during development. J. Exp. Bot., 2001. 52(358): p. 1111-5 [PMID:11432927]