PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_7848375g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

bHLH

Protein Properties

Length: 471aa MW: 53046 Da PI: 4.9523

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_7848375g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29	2e-09	383	425	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +ErrRR+r+N+++ Lr+++P+ + K++ ++L ++eY k+L MA_7848375g0010 383 LAERRRRKRLNERLCMLRSVVPTiS------KMDRTSVLSDTIEYTKQL 425 58*******************66......************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00018	0	21	33	IPR018247	EF-Hand 1, calcium-binding site
PROSITE profile	PS50888	14.602	376	425	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-14	378	439	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.4E-9	382	431	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.1E-13	383	437	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.8E-7	383	425	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence Send to blast
MDTSIYAPTC LNRAIAESPW DNNTNGHIDI PEYRVLQEVN GIALKYSNLE TANSVLNVIG 60 VTRNPNTELV LEDIKSQYGA DTFEGCTHSQ RDPCAWNPIS PWDFDENSIR HGYCQSSKCF 120 KTESREDGGD FGLSSGVELE QNAFGDGTVF KSENSNALHK DQSLDLEKNS WERFSGQALQ 180 SELGLICTNV SDISHVGSES SNFSLRYMHE NFRKTTIGQP YHGMSFNQYD EMEMNRRLFS 240 YTTENVTSTL LDEQRTSIEL FGIEGTKGIA AVFVNEPDGS DGEMLLSTSY KTEIYSDEQS 300 PDTVDLPVKH SEKMVPINTA ERKVANKDGN REENDSITKG LMVKNGDNGA MVTFTTGEIE 360 SSYAKAVGGG MRKGKGQPAK NLLAERRRRK RLNERLCMLR SVVPTISKMD RTSVLSDTIE 420 YTKQLLHQIR FLQRELEPQT DWPALQEPIK DTFGQWPWLG TKNLQTNKFS R

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence Send to blast

MDTSIYAPTC LNRAIAESPW DNNTNGHIDI PEYRVLQEVN GIALKYSNLE TANSVLNVIG  60
VTRNPNTELV LEDIKSQYGA DTFEGCTHSQ RDPCAWNPIS PWDFDENSIR HGYCQSSKCF  120
KTESREDGGD FGLSSGVELE QNAFGDGTVF KSENSNALHK DQSLDLEKNS WERFSGQALQ  180
SELGLICTNV SDISHVGSES SNFSLRYMHE NFRKTTIGQP YHGMSFNQYD EMEMNRRLFS  240
YTTENVTSTL LDEQRTSIEL FGIEGTKGIA AVFVNEPDGS DGEMLLSTSY KTEIYSDEQS  300
PDTVDLPVKH SEKMVPINTA ERKVANKDGN REENDSITKG LMVKNGDNGA MVTFTTGEIE  360
SSYAKAVGGG MRKGKGQPAK NLLAERRRRK RLNERLCMLR SVVPTISKMD RTSVLSDTIE  420
YTKQLLHQIR FLQRELEPQT DWPALQEPIK DTFGQWPWLG TKNLQTNKFS R

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	384	391	ERRRRKRL

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT112334	0.0	BT112334.1 Picea glauca clone GQ03313_I24 mRNA sequence.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP557	16	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.2	4e-10	beta HLH protein 93