PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_79692g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

LBD

Protein Properties

Length: 164aa MW: 18482.8 Da PI: 4.6663

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_79692g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	94.8	9.2e-30	22	117	5	100
DUF260 5 CkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 Ck+ +++C ++C++ f++++ +kf ++h++FGa nv+kl+++lp ++r da++s+vyeA ar++dPv G+vg i+klq q++ l++++ ++++ MA_79692g0010 22 CKMEQKDCLENCTILYSFASNDLHKFSILHQVFGACNVIKLVQDLPSDQRVDAINSMVYEASARLQDPVFGCVGKIQKLQLQISDLQSQITATQST 117 *****************************************************************************************9998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.127	17	118	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-28	21	115	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MMSNAKEKPR TQSSSAAFHD HCKMEQKDCL ENCTILYSFA SNDLHKFSIL HQVFGACNVI 60 KLVQDLPSDQ RVDAINSMVY EASARLQDPV FGCVGKIQKL QLQISDLQSQ ITATQSTIQK 120 IRSQRTQLLD CIPGFKNRDN PTICTSLNED DEEDQDLLDS DLID

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-26	11	120	4	113	LOB family transfactor Ramosa2.1
5ly0_B	1e-26	11	120	4	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT110243	0.0	BT110243.1 Picea glauca clone GQ03218_K02 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A9P1U3	4e-65	A9P1U3_PICSI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP60	16	318

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	6e-27	LOB domain-containing protein 1