PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_80122g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family LBD
Protein Properties Length: 242aa    MW: 26762.2 Da    PI: 8.65
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_80122g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26088.11.1e-274101193
         DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                    +C++C+vlr++C+++C+l+p++     +++q +++ +++k++G++ +++l+++ pe+ r+d+++sl+yeA+ r+ +P+ G +g+++++++ ++q+ 
  MA_80122g0010   4 SCNGCRVLRKGCSESCILRPCLhwistAESQGNATIFLAKFYGRAGLTNLISNGPEHLRPDIFRSLLYEACGRIVNPIDGLLGLLWSGNWAVCQEG 99 
                    6*********************9999777889*************************************************************987 PP

         DUF260  92 ae 93 
                    +e
  MA_80122g0010 100 VE 101
                    76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.7753109IPR004883Lateral organ boundaries, LOB
PfamPF031957.2E-224100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MRISCNGCRV LRKGCSESCI LRPCLHWIST AESQGNATIF LAKFYGRAGL TNLISNGPEH  60
LRPDIFRSLL YEACGRIVNP IDGLLGLLWS GNWAVCQEGV ESILQGTFPA VSWADSASHI  120
AGTAGRELHR SVNPRGRFKR LSFSKSGQKE SKRAPISNHL DSSSKSDDLG NITNALQNSK  180
FNDKYIHKYS TVFSWQEQHE FVSAHLAQTE YRLDLCKFKT RQTEAEAPCN AVGLDLTLGS  240
QG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022009468.16e-63LOB domain-containing protein 41-like
TrEMBLA0A251SGV91e-61A0A251SGV9_HELAN; Putative LOB domain-containing protein 41
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.12e-59LOB domain-containing protein 42