PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_80342g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 895aa    MW: 97635.5 Da    PI: 7.9461
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_80342g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.94.2e-07752801147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
    MA_80342g0010 752 RRPFSVAEVEALVHAVEKLGTGRWRDVKLRAFeqaKHRTYVDLKDKWKTL 801
                      6789999*******************9888888**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542362.04E-8534625IPR029071Ubiquitin-related domain
PROSITE profilePS500539.569539609IPR000626Ubiquitin domain
PROSITE profilePS5129416.112747806IPR017930Myb domain
SMARTSM007177.0E-7751804IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-10752802IPR009057Homeodomain-like
CDDcd116609.09E-17753803No hitNo description
SuperFamilySSF466899.87E-15753833IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0005515Molecular Functionprotein binding
GO:0008301Molecular FunctionDNA binding, bending
GO:0042162Molecular Functiontelomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 895 aa     Download sequence    Send to blast
MCNRVPWATG CARVSDVSVI QRPRSTEKFT QASHRTQEWG TTWGQVLSRG YAKGSKMKPA  60
CPVATGSRLS FPRFKESIXD LADLQAFEIG SVKEINQARE ENGKRMEYGF LGYQAPPLPR  120
AMRSARGRGS GYRKKDGYDN GMVSIELLAT VAGDLLQEQE NQKSAFEQLG VKSFEICHEV  180
AGNGPREEEN CAEEALLELE KSHIYTFEDA VQRQASSSQG TKVEPDDQGS SDENAVVLGA  240
SHRKVTLDAS CIKESPDMII QSASRSVSSI SKSGCPVQSY NHNQKGLDIH VNTQARDEKA  300
MQGISLGESG EKKGCVIEKE VYSTNTCKER FLTEQRLLGS GHNILDSGVG VTKETLGIVE  360
NNEGKGENEI DECNLGRWKR GHHVCENMED DLMLDAHSLP ASSGVSEEAP LDVDMKPPPL  420
VSSASSRKRK RSDIDIIAND DKMLKRETPG YGGSYTRQRT VRCSPSKRRR LAEEICIPTS  480
DGHASTASAG LDSNGEDGEP PASAAKIRRA KSASVSSSPT SATGSSKHSS IKKSSESHVK  540
LTIKSFTVPE LFIDMPESAT VASLKRTVME AAMNLLGDGL RVCVLLQGKK VSDESYTLDQ  600
LGIAHGGKLD SVGFMLEPNP MPTSQACAED PLFMLSRAVT QPSPRYPTGS ASGQTTAAEG  660
NKSAMKSRSN KINGTAGAEV AVTTGGRTQT ETNQWTKSEY EVINDSPHMQ AGSNPGALIV  720
HPIVGAETAQ GLALVPLNHK SRGSEIGKRR IRRPFSVAEV EALVHAVEKL GTGRWRDVKL  780
RAFEQAKHRT YVDLKDKWKT LVHTAKIAPH QRRGEPVPQE LLDRVIHAHN YWTDQQAKQQ  840
AELALAGVPL KEMRATGTTI SLTTHVDAYS TLPIDTNTIY RRWLLQMHGD KKDIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-527368601119Telomere binding protein TBP1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1466470KRRRL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1109020.0BT110902.1 Picea glauca clone GQ03229_J03 mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13911225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.13e-64TRF-like 2