 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | MA_8215969g0010 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
|
||||||||
| Family | Trihelix | ||||||||
| Protein Properties | Length: 198aa MW: 22483.4 Da PI: 7.6105 | ||||||||
| Description | Trihelix family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | trihelix | 38.1 | 3.9e-12 | 19 | 105 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
W v L++ + + + + lk ++Wee+ k++ + + +s kqC++k ++l+kryk +k+ + ++ +++ t+++f++l+
MA_8215969g0010 19 WHPATVFRLLDTYGGKYADGKHH-LKIKDWEEILKAVnrqsEGSKTCKSVKQCRDKVDSLKKRYKLEKQKADRHGVDKV-TWSFFHKLD 105
77778888888888877777665.9999*********88655556678*************************966666.9******98 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF13837 | 4.4E-15 | 17 | 107 | No hit | No description |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 198 aa Download sequence Send to blast |
MGSNIYDFDK ADGVCRCEWH PATVFRLLDT YGGKYADGKH HLKIKDWEEI LKAVNRQSEG 60 SKTCKSVKQC RDKVDSLKKR YKLEKQKADR HGVDKVTWSF FHKLDEIMGA FNRSAKDSEI 120 ADRIETEADK FEEYSVGNAL GIAESAIVDN EIVMAENSPA SASTTEEGKA LAHDRLHKIY 180 LLSFAALHWN SLKTIMPR |
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | BT101318 | 0.0 | BT101318.1 Picea glauca clone GQ01301_J22 mRNA sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| TrEMBL | A0A0D6R2W5 | 1e-36 | A0A0D6R2W5_ARACU; Uncharacterized protein | ||||
| TrEMBL | A0A0D6R6K4 | 9e-36 | A0A0D6R6K4_ARACU; Uncharacterized protein | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Representative plant | OGRP11635 | 4 | 7 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G10030.1 | 6e-18 | Trihelix family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|