PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_83118g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 248aa    MW: 27881.1 Da    PI: 6.6478
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_83118g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.4e-181868256
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    y+GVr++  +g+WvAeIr p++   r+r +lg+f tae Aa a+++a+ +++ge
  MA_83118g0010 18 LYRGVRQRQ-WGKWVAEIRLPRN---RTRLWLGTFETAEAAALAYDRAAYQWRGE 68
                   59****999.**********955...5************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.13E-191777No hitNo description
SuperFamilySSF541712.35E-221876IPR016177DNA-binding domain
SMARTSM003804.3E-341881IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-301876IPR001471AP2/ERF domain
PROSITE profilePS5103222.9451875IPR001471AP2/ERF domain
PRINTSPR003676.7E-111930IPR001471AP2/ERF domain
PfamPF008471.4E-121968IPR001471AP2/ERF domain
PRINTSPR003676.7E-114157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MEKRDKCAIA ARQPMKKLYR GVRQRQWGKW VAEIRLPRNR TRLWLGTFET AEAAALAYDR  60
AAYQWRGECA RLNFPHLFSK NCQESYISLT SGRSPRHYSE SSDQKYAYNS GSVHMNACKG  120
DPVRTTAYNG DPVQINVYKS DPVQISAHSG NAVGKVASLA EFMPESSSSH ESPNAQVERF  180
VWEEGEDENW LNNLPVLEAD MTWDVLNGCS DLGTEGSQTR TCALQTENAC ISSGKFEFQG  240
VWLGCCCE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-201775160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0829180.0EF082918.1 Picea sitchensis clone WS02722_I04 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NNQ81e-166A9NNQ8_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22200.15e-25ERF family protein