PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_8356281g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 250aa    MW: 28224.2 Da    PI: 9.28
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_8356281g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.87.9e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+ Ed+ll ++++ +G g+W++ ++  g+ R++k+c++rw +yl
  MA_8356281g0010 14 RGPWTAREDLLLTKYIEAHGEGQWRALPKQAGLLRCGKSCRLRWMNYL 61
                     89******************************99************97 PP
2Myb_DNA-binding53.46.1e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T +E+el+v+++k+lG++ W++Ia +++ gRt++++k++w+++l
  MA_8356281g0010  67 RGNITLDEEELIVRLHKLLGNR-WSLIAGRLP-GRTDNEIKNFWNTHL 112
                      7899******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.844961IPR017930Myb domain
SuperFamilySSF466897.42E-2911108IPR009057Homeodomain-like
SMARTSM007171.6E-121363IPR001005SANT/Myb domain
PfamPF002493.0E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-231568IPR009057Homeodomain-like
CDDcd001675.02E-101661No hitNo description
PROSITE profilePS5129425.74362116IPR017930Myb domain
SMARTSM007171.2E-1566114IPR001005SANT/Myb domain
PfamPF002491.2E-1467112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-2569116IPR009057Homeodomain-like
CDDcd001674.30E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MGRAPCCSKV GLHRGPWTAR EDLLLTKYIE AHGEGQWRAL PKQAGLLRCG KSCRLRWMNY  60
LRPDIKRGNI TLDEEELIVR LHKLLGNRWS LIAGRLPGRT DNEIKNFWNT HLSKKLMMKG  120
IDPKTHQPAP ERIHKPRRLM KDNEDQETES FEHGMTEKDV ISSSGGKGVQ PIHLPKPNRY  180
IAFPRHLSHE ANVGITNTSV TNSDVQDVLL SPSIDLNSPC KNLQASVDSD HSSSGMLSDI  240
NPIHELGREV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU1312240.0KU131224.1 Picea abies transcription factor MYB35 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007218760.14e-85myb-related protein 308
RefseqXP_009334363.15e-85PREDICTED: myb-related protein 308-like
SwissprotQ388503e-70MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A167V9360.0A0A167V936_PICAB; Transcription factor MYB35
STRINGXP_009334363.12e-84(Pyrus x bretschneideri)
STRINGEMJ199592e-84(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-72myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]