PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_83624g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

Dof

Protein Properties

Length: 326aa MW: 35689.6 Da PI: 5.1306

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_83624g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	104.7	5.4e-33	89	140	3	54
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGgg 54 +++lkcprCdstntkfCyynnysl+qPr+fCk+CrryWtkGG+lr vP g MA_83624g0010 89 QEILKCPRCDSTNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGSLRSVPRSNG 140 6789********************************************7666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	8.9E-29	90	140	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	25.881	92	146	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	5.0E-22	92	140	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	94	130	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
LRIPLDLGCL FAPETSELRA DLLVAFISIL SQEDGTFCLK ASSPVDVLSP AAMMKDQEEM 60 GVLEGTGDMM DSYPPRQLLD RRLKPQGDQE ILKCPRCDST NTKFCYYNNY SLTQPRHFCK 120 TCRRYWTKGG SLRSVPRSNG EACSSATGSD QLSPSLGGVS NDCKYYNGDG EELIGINYVN 180 SLRQVDHEAA FAGCSINSGV YGIQANDHQS SQSFQPYHLP TALQSLQGSL IQAPNGFNQA 240 ANRGDLGLVQ QQAAGAVSYD REAYHPYINM SLDHSDGHSR APQQHKSNNI IENPPQGLVY 300 EGGYWNGGVW PDLSAYGLSN INPNSM

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF082840	0.0	EF082840.1 Picea sitchensis clone WS0298_N22 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A9NNI1	0.0	A9NNI1_PICSI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	7e-30	TARGET OF MONOPTEROS 6