PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_84935g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

G2-like

Protein Properties

Length: 358aa MW: 40581.1 Da PI: 8.1675

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_84935g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.5	6.4e-33	19	72	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp LH++Fv+ave+LGG +kAtPk +l+lm+vkgLt++hvkSHLQ+YR+ MA_84935g0010 19 PRLRWTPHLHQCFVNAVERLGGRDKATPKLVLQLMNVKGLTISHVKSHLQMYRT 72 8****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.8E-32	15	74	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.282	15	75	IPR017930	Myb domain
SuperFamily	SSF46689	1.27E-15	17	75	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-24	19	72	IPR006447	Myb domain, plants
Pfam	PF00249	3.1E-9	20	71	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MGSCERNGRV RQYIRSKVPR LRWTPHLHQC FVNAVERLGG RDKATPKLVL QLMNVKGLTI 60 SHVKSHLQMY RTARNNEGGS SESEPKSLPL TQIQNFQKHS IADSQKQSLT DNDHGEDNLD 120 SEFSKTSTCS FTTGHKRPLK RLWTGETDSF SMASERSTQG HADSIERYPD SRHAGTHGNW 180 APLRENLTDG LVLLRDQYAT SVTSRDNHST TDQEINRWRE KQSSFQFSGQ VREEDSATYT 240 LNKEKSNCRS HTSLKGNEVE HLVRLLLLRH EQSQAMDKIL EPLTAPSELQ LIERLCPGNG 300 KSENEKPGYE TVDSTNLSLG INTAYNELKT SCPREKGLLS SKYNSFQDHS DIKLDLTI

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MGSCERNGRV RQYIRSKVPR LRWTPHLHQC FVNAVERLGG RDKATPKLVL QLMNVKGLTI  60
SHVKSHLQMY RTARNNEGGS SESEPKSLPL TQIQNFQKHS IADSQKQSLT DNDHGEDNLD  120
SEFSKTSTCS FTTGHKRPLK RLWTGETDSF SMASERSTQG HADSIERYPD SRHAGTHGNW  180
APLRENLTDG LVLLRDQYAT SVTSRDNHST TDQEINRWRE KQSSFQFSGQ VREEDSATYT  240
LNKEKSNCRS HTSLKGNEVE HLVRLLLLRH EQSQAMDKIL EPLTAPSELQ LIERLCPGNG  300
KSENEKPGYE TVDSTNLSLG INTAYNELKT SCPREKGLLS SKYNSFQDHS DIKLDLTI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	6e-19	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-19	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-19	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-19	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT102368	0.0	BT102368.1 Picea glauca clone GQ0183_D11 mRNA sequence.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP285	15	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	3e-31	G2-like family protein