PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_86195g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family AP2
Protein Properties Length: 859aa    MW: 94412.8 Da    PI: 6.8179
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_86195g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.15.7e-15426485155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  MA_86195g0010 426 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 485
                    57*******************666664478446*************************98 PP
2AP245.51.9e-14530579355
            AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  MA_86195g0010 530 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 579
                    9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.32E-22426495No hitNo description
SuperFamilySSF541712.88E-17426495IPR016177DNA-binding domain
PfamPF008477.6E-12426485IPR001471AP2/ERF domain
SMARTSM003801.2E-29427499IPR001471AP2/ERF domain
PROSITE profilePS5103219.23427493IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-15427494IPR001471AP2/ERF domain
PRINTSPR003675.4E-6428439IPR001471AP2/ERF domain
CDDcd000184.08E-24528589No hitNo description
SuperFamilySSF541711.63E-17528589IPR016177DNA-binding domain
SMARTSM003807.1E-33529593IPR001471AP2/ERF domain
PROSITE profilePS5103219.203529587IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-18529588IPR001471AP2/ERF domain
PfamPF008472.6E-9530579IPR001471AP2/ERF domain
PRINTSPR003675.4E-6569589IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000723Biological Processtelomere maintenance
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0010073Biological Processmeristem maintenance
GO:0010449Biological Processroot meristem growth
GO:0019827Biological Processstem cell population maintenance
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 859 aa     Download sequence    Send to blast
MGSVNNWLGF SLSPNMTVEL QDSSQSQSAS AVTVATSSMV HSSVADPSNM NIGFGSRDCF  60
SHNAHQAPPP PMHMHIPPEM TLRSDGSLYI LDSINRSQNE DWHLKNLEQT RSMQDAESQQ  120
HLISADLSML VGGRSDHMCS DSRYDHNMIC QSTNNNNRRH DGEGPKLEDF LGGASLGGGG  180
GQYSESRTSE ISQPSANLND MYGTAAPSFN DGDMKSSFMS DSARLNCFHA FDIADSELSA  240
TNSSKRSDDQ HSIKAESLSG VSAIHSLNLR DSYDHNSNEY IFPECTLQLP QTSGVNNNNI  300
NGLSMIKTWL RTQPTSSSAE SKMTNTINTN YGNGASCSTI TTTTTATNPE QPKEGMDTLT  360
NIQSLKLSMS PTSQSTTSLA IVPAATQNGT LDTSLPDSKK RLIPDKPTTS EPATRKSIDT  420
FGQRTSIYRG VTRHRWTGRY EAHLWDNSCR REGQTRKGRQ VYLGGYDKEE KAARAYDLAA  480
LKYWGPTTTT NFPISNYEKE LEEMKHMTRQ EYVASLRRKS SGFSRGASMY RGVTRHHQHG  540
RWQARIGRVA GNKDLYLGTF STQEEAAEAY DIAAIKFRGL NAVTNFDMSR YDVKSILASS  600
TLPVGGHVKR IKEAEPSDPS VDGRRNDEDS STLSSYATSN YSNATNSKTG HEWPLIAFQN  660
HANQQRGMWC KQEVQQNQPQ DFQVQLHSLH NQKFFQPSLM TTNATVLHNL MTLQESPSVD  720
SNSAGSTSGL FTNISANNLA GSGLLMASNT PTMHQSMGAT DNQTNRVSFG QSEQGSLKGN  780
SAYESMNLYG DPYSRGVYYL PQQQQQQQIA TGTVKAGNYD SNAAAYNNWM TTAPAQALAQ  840
RPNGLTVCHA PIFSIWNDS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1057440.0BT105744.1 Picea glauca clone GQ02827_L11 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010241511.10.0PREDICTED: AP2-like ethylene-responsive transcription factor BBM1
TrEMBLA0A088BUC10.0A0A088BUC1_9SPER; Aintegumenta-like transcription factor baby boom
STRINGXP_010241511.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.11e-128AP2 family protein