PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_867871g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 219aa    MW: 24971.5 Da    PI: 4.9593
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_867871g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.11.1e-091291646
                     HHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding 16 vkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +++lG++ W++Ia +++  Rt++++k++w++
   MA_867871g0010  1 HRLLGNR-WSLIAGRLP-SRTGNEIKNYWNT 29
                     6789***.*********.***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001672.97E-6129No hitNo description
PfamPF002495.5E-8130IPR001005SANT/Myb domain
PROSITE profilePS5129418.007135IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-13131IPR009057Homeodomain-like
SuperFamilySSF466896.85E-8240IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
HRLLGNRWSL IAGRLPSRTG NEIKNYWNTQ LSKRVQMGEF EPRFQRPFKI WGIPSPPDYD  60
EEGVVDKDRY TSQTLPLKRR AVRYCGRALV NGDILDSYDY DHVPDNHDGI NQEEDLKAAD  120
DHVGEIDTSK SWSQLLLEIC MGDYQNDRLE AINGLQPNPS NGTDHRHQSP SPSFSQSIIL  180
QENQSSCNLI DQEFPHSKHF NSSCSDSFSD LGELSIIVP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU1312180.0KU131218.1 Picea abies transcription factor MYB29 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A167V8X01e-121A0A167V8X0_PICAB; Transcription factor MYB29
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.18e-16myb domain protein 5