PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_8812600g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

HSF

Protein Properties

Length: 240aa MW: 27231.7 Da PI: 9.2327

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_8812600g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	106.8	1.7e-33	17	109	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 Fl k+y+ ++d+++++++sw +++n+fvv+ ++ef+ +vLp+yF h+nf+SFvRQLn+YgF+k+ + + eF+++ F+kg+++ll+ MA_8812600g0010 17 FLVKTYRFVDDPSTDRIVSWGDHNNTFVVWRPKEFSASVLPRYFNHTNFSSFVRQLNTYGFRKIVRGR---------CEFSNELFRKGQQHLLS 101 9*************************************************************9988.........67*********** PP XXXXXXXX CS HSF_DNA-bind 96 kikrkkse 103 +i+r+ks+ MA_8812600g0010 102 RIRRRKSS 109 ***987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	2.4E-51	13	106	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	7.48E-32	15	106	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	6.3E-36	15	106	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.1E-29	17	106	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.5E-18	17	40	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.5E-18	55	67	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.5E-18	68	80	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MEEGCVTDAG RLVAAPFLVK TYRFVDDPST DRIVSWGDHN NTFVVWRPKE FSASVLPRYF 60 NHTNFSSFVR QLNTYGFRKI VRGRCEFSNE LFRKGQQHLL SRIRRRKSSS TSTAQASRMV 120 EYDESLSLIP NSSFTVQDSA VPAAECSLSE ENEILKRNNA LLLSEIDRLQ NICTGISRSL 180 FRTTPGISTE RLPGLTHLNR PKIGNAMDRK TDNLSRSSFM TDVAQENNVN PPELFGVPLY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	2e-22	9	109	12	123	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ063145	2e-40	FJ063145.2 Pinus taeda isolate 4925 anonymous locus 0_17776_01 genomic sequence.
GenBank	FJ063146	2e-40	FJ063146.2 Pinus taeda isolate 4926 anonymous locus 0_17776_01 genomic sequence.
GenBank	FJ063147	2e-40	FJ063147.2 Pinus taeda isolate 4920 anonymous locus 0_17776_01 genomic sequence.
GenBank	FJ063148	2e-40	FJ063148.2 Pinus taeda isolate 4933 anonymous locus 0_17776_01 genomic sequence.
GenBank	FJ063149	2e-40	FJ063149.2 Pinus taeda isolate 4922 anonymous locus 0_17776_01 genomic sequence.
GenBank	FJ063150	2e-40	FJ063150.2 Pinus taeda isolate 4924 anonymous locus 0_17776_01 genomic sequence.
GenBank	FJ063151	2e-40	FJ063151.2 Pinus taeda isolate 4930 anonymous locus 0_17776_01 genomic sequence.
GenBank	FJ063152	2e-40	FJ063152.2 Pinus taeda isolate 4929 anonymous locus 0_17776_01 genomic sequence.
GenBank	FJ063153	2e-40	FJ063153.2 Pinus taeda isolate 4936 anonymous locus 0_17776_01 genomic sequence.
GenBank	FJ063154	2e-40	FJ063154.2 Pinus taeda isolate 4927 anonymous locus 0_17776_01 genomic sequence.
GenBank	FJ063155	2e-40	FJ063155.2 Pinus taeda isolate 4923 anonymous locus 0_17776_01 genomic sequence.
GenBank	FJ063156	2e-40	FJ063156.2 Pinus taeda isolate 4934 anonymous locus 0_17776_01 genomic sequence.
GenBank	FJ063157	2e-40	FJ063157.2 Pinus taeda isolate 4921 anonymous locus 0_17776_01 genomic sequence.
GenBank	FJ063158	2e-40	FJ063158.2 Pinus taeda isolate 4932 anonymous locus 0_17776_01 genomic sequence.
GenBank	FJ063159	2e-40	FJ063159.2 Pinus taeda isolate 4931 anonymous locus 0_17776_01 genomic sequence.
GenBank	FJ063160	2e-40	FJ063160.2 Pinus taeda isolate 4919 anonymous locus 0_17776_01 genomic sequence.
GenBank	FJ063161	2e-40	FJ063161.2 Pinus taeda isolate 4928 anonymous locus 0_17776_01 genomic sequence.
GenBank	FJ063162	2e-40	FJ063162.2 Pinus taeda isolate 4935 anonymous locus 0_17776_01 genomic sequence.
GenBank	JQ262252	2e-40	JQ262252.1 Pinus radiata isolate 13630 hypothetical protein (0_17776_01) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q9C635	7e-50	HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBL	H9WK88	2e-71	H9WK88_PINTA; Uncharacterized protein (Fragment)
STRING	GSMUA_Achr9P15370_001	1e-50	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP96	17	233

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46264.1	2e-45	heat shock transcription factor B4