PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_8832398g0010
Common Namewox2
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family WOX
Protein Properties Length: 194aa    MW: 22171.7 Da    PI: 7.8606
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_8832398g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox69.15.5e-22362357
                     --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     +R+++tkeq+e Le+++ +  r+psa+++e++A++l    +++ ++V++WFqN++a+e++
  MA_8832398g0010  3 TRWNPTKEQIELLEAMYSQgIRTPSADQIEQIASRLgmygNIEGKNVFYWFQNHKARERQ 62
                     8*****************99**************************************97 PP
2Wus_type_Homeobox112.12.9e-36264365
  Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       +tRW+Pt+eQi++Le++y++G+rtP++++i++i+++L  yG+ie+kNVfyWFQN+kaRerq+q
    MA_8832398g0010  2 STRWNPTKEQIELLEAMYSQGIRTPSADQIEQIASRLGMYGNIEGKNVFYWFQNHKARERQRQ 64
                       69***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007112.017163IPR001356Homeobox domain
SMARTSM003891.9E-7167IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-10362IPR009057Homeodomain-like
CDDcd000864.48E-8364No hitNo description
SuperFamilySSF466891.2E-14368IPR009057Homeodomain-like
PfamPF000461.9E-19362IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009942Biological Processlongitudinal axis specification
GO:0010654Biological Processapical cell fate commitment
GO:0048825Biological Processcotyledon development
GO:0080167Biological Processresponse to karrikin
GO:0090451Biological Processcotyledon boundary formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MSTRWNPTKE QIELLEAMYS QGIRTPSADQ IEQIASRLGM YGNIEGKNVF YWFQNHKARE  60
RQRQKQERGV FSNQFLQPPS FSGASHTHTE VLPPQQQSAM AMPKVGSTLT LKEQKTYTFQ  120
HSQDSLCEPQ TLELFPLHPT GIAEYRSEPV SAFGFQSSVR NRTMNENIDE QNNASSGGGH  180
FHNFFHFIPQ HPGK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM2867470.0AM286747.1 Picea abies mRNA for homeodomain transcription factor (wox2 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ14FJ61e-140Q14FJ6_PICAB; Homeodomain transcription factor
STRINGPGSC0003DMT4000779472e-38(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP71671117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.13e-28WUSCHEL related homeobox 2
Publications ? help Back to Top
  1. Palovaara J,Hakman I
    Conifer WOX-related homeodomain transcription factors, developmental consideration and expression dynamic of WOX2 during Picea abies somatic embryogenesis.
    Plant Mol. Biol., 2008. 66(5): p. 533-49
    [PMID:18209956]