PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_8850184g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

WOX

Protein Properties

Length: 157aa MW: 17792.7 Da PI: 9.0128

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_8850184g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.6	1e-18	14	74	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++++eq+++Le+ F++ +p ++e+++++++l ++ ++++++WFqNr+ + k+ MA_8850184g0010 14 KPRWNPKPEQIRILESIFNSgMTHPPRDEIKRITAQLqefgQVGDANIFYWFQNRKSRTKQ 74 89***************99***********************************996 PP
2	Wus_type_Homeobox	110.1	1.2e-35	13	76	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RW+P+peQi+iLe++++sG+ P+++ei+rita+L+e+G+++d+N+fyWFQNrk+R +q+q MA_8850184g0010 13 TKPRWNPKPEQIRILESIFNSGMTHPPRDEIKRITAQLQEFGQVGDANIFYWFQNRKSRTKQRQ 76 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	11.548	10	75	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.58E-13	10	80	IPR009057	Homeodomain-like
SMART	SM00389	1.5E-5	12	79	IPR001356	Homeobox domain
CDD	cd00086	5.76E-7	14	76	No hit	No description
Pfam	PF00046	2.3E-16	14	74	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.0E-8	14	74	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
TSSGNEERSQ PETKPRWNPK PEQIRILESI FNSGMTHPPR DEIKRITAQL QEFGQVGDAN 60 IFYWFQNRKS RTKQRQRYLQ SAESSKSSAE KSSTDQSKAI MDVADTTTNS LRNTSETYSS 120 VVPATPFSAH QEHYHLLMNG KMSIDQCSYM QTVAAAA

Functional Description ? help Back to Top
Source	Description
UniProt	Homeodomain transcription factor required for meristem growth and early development (PubMed:15753038). Promotes cell proliferation and prevents premature differentiation in meristematic tissues during postembryonic development (PubMed:15753038). Essential for maintaining tissue growth during embryogenesis (PubMed:17706632). May act by repressing TSS to promote meristematic proliferation (PubMed:21185286). Involved in the transcriptional activation of a subset of cytokinin response factors (PubMed:20110319). May act as a negative regulator of cytokinin signaling in the dark (PubMed:21057190). {ECO:0000269\|PubMed:15753038, ECO:0000269\|PubMed:17706632, ECO:0000269\|PubMed:20110319, ECO:0000269\|PubMed:21057190, ECO:0000303\|PubMed:21185286}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in the zygote after fertilization by the transcription factor WRKY2. {ECO:0000269\|PubMed:21316593}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010279211.1	1e-41	PREDICTED: WUSCHEL-related homeobox 9-like
Swissprot	Q6X7J4	9e-38	WOX9_ARATH; WUSCHEL-related homeobox 9
TrEMBL	D5LMH9	5e-83	D5LMH9_PICAB; Putative wuschel homeobox protein WOX8/9
STRING	XP_010279211.1	5e-41	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP6103	12	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33880.1	1e-39	homeobox-3

Publications ? help Back to Top
Wang W, et al. Dwarf Tiller1, a Wuschel-related homeobox transcription factor, is required for tiller growth in rice. PLoS Genet., 2014. 10(3): p. e1004154 [PMID:24625559] Zhu T,Moschou PN,Alvarez JM,Sohlberg JJ,von Arnold S Wuschel-related homeobox 8/9 is important for proper embryo patterning in the gymnosperm Norway spruce. J. Exp. Bot., 2014. 65(22): p. 6543-52 [PMID:25205582] Raines T, et al. The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis. Plant J., 2016. 85(1): p. 134-47 [PMID:26662515] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605] Blein T,Pautot V,Laufs P Combinations of Mutations Sufficient to Alter Arabidopsis Leaf Dissection. Plants (Basel), 2013. 2(2): p. 230-47 [PMID:27137374]