PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_8854574g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

LBD

Protein Properties

Length: 63aa MW: 7059.19 Da PI: 9.1454

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_8854574g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	45.2	2.6e-14	4	62	1	54
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeer 54 +C++C+vlr++C+++C l+p++ ++q++++ +++k++G++ +++l+++ p++ r MA_8854574g0010 4 SCNGCRVLRKGCSDSCELRPCLqwirtSESQANATVFLAKFYGRTGLMNLINSGPDHLR 62 6*******************9999888999*******************999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	11.393	3	63	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.0E-10	4	62	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 63 aa Download sequence Send to blast
MRVSCNGCRV LRKGCSDSCE LRPCLQWIRT SESQANATVF LAKFYGRTGL MNLINSGPDH 60 LRP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021838468.1	1e-35	LOB domain-containing protein 40-like
Swissprot	Q9ZW96	9e-35	LBD40_ARATH; LOB domain-containing protein 40
TrEMBL	A0A0K9REJ1	2e-34	A0A0K9REJ1_SPIOL; Uncharacterized protein
STRING	VIT_14s0006g02950.t01	1e-34	(Vitis vinifera)
STRING	evm.model.supercontig_282.15	1e-34	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP403	16	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67100.1	4e-37	LOB domain-containing protein 40