PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_88831g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 195aa    MW: 22219.2 Da    PI: 9.7542
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_88831g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.11.4e-0768111755
                    HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    ++ r RR++i+ ++  L++++P       k ++ +++L +A++Y+k Lq
  MA_88831g0010  68 IAARHRRHKIRIRLKILQSMVPGG-----KNMDTVSMLDEAIQYVKFLQ 111
                    56799*****************87.....57*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.57961110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.01E-1166123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-867116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-968111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-569111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.80E-481113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MAYYWGTYET EWPLKSTSGV GNVKVKFKKA IACGAGELSS DASLSAFDKH KKQKQNQVQK  60
LSMDPQSIAA RHRRHKIRIR LKILQSMVPG GKNMDTVSML DEAIQYVKFL QFMHFWLQSR  120
IMQGNSCTTN STYNTSFLYA QELCNSTGFD VHSHGLYGIP FGYSSLRNFT DQGSAISQHD  180
WNHCGYVRPY DPSRL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1154000.0BT115400.1 Picea glauca clone GQ03615_M03 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5A8Z37e-91D5A8Z3_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP89411014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.15e-11APRATAXIN-like