PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_8965632g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HB-other
Protein Properties Length: 112aa    MW: 12624.6 Da    PI: 10.5186
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_8965632g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox18.63.1e-0613542556
                     --HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
         Homeobox 25 psaeereeLAkkl..........gLterqVkvWFqNrRakek 56
                     p++++++ LA+k            ++ +qV +WFqN+R+ +k
  MA_8965632g0010 13 PNRDMIRSLAEKFsasperdgkiLVQIKQVWTWFQNKRYSQK 54
                     7777888888888888888877778889***********999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-5161IPR009057Homeodomain-like
PROSITE profilePS500719.216156IPR001356Homeobox domain
SuperFamilySSF466894.28E-81157IPR009057Homeodomain-like
CDDcd000860.002521357No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MEKVLEDTKG AIPNRDMIRS LAEKFSASPE RDGKILVQIK QVWTWFQNKR YSQKTKSTKV  60
QGNAAPSPRD DLVAKRAVTS SAAVPSGALL DYSLIVKLGF NFYFLVHFIL LH
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1170971e-141BT117097.1 Picea glauca clone GQ03812_M13 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010275171.15e-25PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2
TrEMBLB8LNE39e-53B8LNE3_PICSI; Uncharacterized protein
STRINGXP_010275166.13e-24(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.14e-20sequence-specific DNA binding transcription factors;sequence-specific DNA binding