PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_8992661g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HSF
Protein Properties Length: 228aa    MW: 25695.3 Da    PI: 9.8127
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_8992661g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.17.9e-35261182103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl k+y++++d+++++++sw +n+n+fvv+ ++ef+ +vLp+yF h+nf+SFvRQLn+YgF+k+ + +          eF+++ F+kg+k+ll+
  MA_8992661g0010  26 FLVKTYRLVDDPSTDHIVSWGDNNNTFVVWRPKEFSASVLPSYFNHTNFSSFVRQLNTYGFRKIVRGR---------CEFANELFRKGQKHLLS 110
                      9***************************************************************9988.........67*************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                      +i+r+k +
  MA_8992661g0010 111 HIQRRKPS 118
                      *****975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.0E-5322115IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.1E-3724115IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.02E-3324115IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.2E-182649IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.9E-3026115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-186476IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-187789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MGEGGLVRDA RGGVARDAGR LVAAPFLVKT YRLVDDPSTD HIVSWGDNNN TFVVWRPKEF  60
SASVLPSYFN HTNFSSFVRQ LNTYGFRKIV RGRCEFANEL FRKGQKHLLS HIQRRKPSAS  120
PVQMDYGNYS LFPPILSTQH SDVSIEAPSL SEENETLRRN NSLLLSEISR LKNICSRDIT  180
LFILQNTIDP PVVDKDRKIH NAGPCSSMKD VAKEISMSPP KLFGVPLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-2311153129Heat shock factor protein 1
5d5v_B1e-2311153129Heat shock factor protein 1
5d5v_D1e-2311153129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1125870.0BT112587.1 Picea glauca clone GQ03318_A02 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002298460.19e-61heat stress transcription factor B-4b
SwissprotQ9C6352e-56HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLH9WUJ64e-93H9WUJ6_PINTA; Uncharacterized protein (Fragment)
STRINGPOPTR_0001s28040.14e-60(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.17e-59heat shock transcription factor B4