PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_904750g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 261aa    MW: 28680.8 Da    PI: 4.2127
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_904750g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.58.2e-193383155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    + y+GVr++  +g+Wv+eIr+p   + r +r +lg+f+ta+eAa a++ a+++l+g
  MA_904750g0010 33 CNYRGVRQRT-WGKWVSEIREP---N-RgARLWLGTFDTAQEAALAYDDAARALYG 83
                    56*****999.**********8...3.35***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.2E-133383IPR001471AP2/ERF domain
CDDcd000181.31E-333393No hitNo description
SuperFamilySSF541712.75E-213493IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.4E-313493IPR001471AP2/ERF domain
PROSITE profilePS5103221.8913491IPR001471AP2/ERF domain
SMARTSM003804.9E-343497IPR001471AP2/ERF domain
PRINTSPR003676.7E-113546IPR001471AP2/ERF domain
PRINTSPR003676.7E-115773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MALIGGATKQ IRKTRGSKKG CMKGKGGPEN ALCNYRGVRQ RTWGKWVSEI REPNRGARLW  60
LGTFDTAQEA ALAYDDAARA LYGSEANLNL PDSIKKPTGF QIQPACNNNM QSDVFTDHVD  120
GSVDTIPDSK DQQVSLSTAN EIRVEDIPAM INGSTSINQP LDELLSVDSH ESNFMEGLEL  180
ESISSISNSC IIHDQISSLD FIDENDSSQI FNGDVAWLPL DLPPLNDDAT TSFELPEQES  240
DTVKATLDDH ILNIQNNWLP L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-203491260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009106200.12e-44PREDICTED: dehydration-responsive element-binding protein 2D
RefseqXP_013652440.12e-44dehydration-responsive element-binding protein 2D
TrEMBLA0A087HIN29e-44A0A087HIN2_ARAAL; Uncharacterized protein
STRINGA0A087HIN21e-44(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.16e-27ERF family protein