PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_905082g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family Trihelix
Protein Properties Length: 287aa    MW: 32740 Da    PI: 6.8423
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_905082g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix30.59.4e-10142208267
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikeg 67 
                     W++  + +L+   ++m  +++rg+l k++W ++++++ +    + s +qCk kw+ l+k y k k +
  MA_905082g0010 142 WPNTAIDVLLLKFEDMCFNVSRGRLGKTHWGQIADAVNAVCSaNYSGVQCKYKWNRLKKSYNKAKLH 208
                     9************************************88776377*****************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.3E-10142222No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MGDSVKTPQL LEEPSTTTSP HHQQHNNKKG STSSIVEPES MTLTHYNLNT VQQSPRASSS  60
QYHHQQHHFR SKQESIACIR SVLQNFMASP SIQSQNPIDN RPPLSLKRKE MTEXXIDNRP  120
PLSLKRKEMT ESPSRAQKEA LWPNTAIDVL LLKFEDMCFN VSRGRLGKTH WGQIADAVNA  180
VCSANYSGVQ CKYKWNRLKK SYNKAKLHGE TSRFLFYKRV ERIVHRASGQ KLHEEEEEEE  240
EEEEEMASED DDVDSICEAA SIESKPSSAS MSATEDDDVH RRPARLL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1147690.0BT114769.1 Picea glauca clone GQ03601_N05 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5AEE51e-150D5AEE5_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.15e-08sequence-specific DNA binding transcription factors