PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_91212g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

ZF-HD

Protein Properties

Length: 213aa MW: 23782.7 Da PI: 6.7263

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_91212g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	107	1.1e-33	103	159	3	60
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 +vrY+eC+kNhAas+Gg+avDGCgEfmps geegt+ alkCaAC+CHRnFHRreve e MA_91212g0010 103 AVRYRECRKNHAASIGGYAVDGCGEFMPS-GEEGTSGALKCAACNCHRNFHRREVEGE 159 79************************9.999*******************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	6.0E-24	98	159	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	3.8E-31	104	156	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	8.4E-30	105	156	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.172	106	155	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MNREVQVSIP MPSNYHQTIQ ESSRLQQIYA KTLGIVEGMS PPEDLRSQVQ GMRPPHHVHE 60 TTAAARPGPP PPVHEDMRTQ QHQQQQHYPQ ENNRNADNIL IKAVRYRECR KNHAASIGGY 120 AVDGCGEFMP SGEEGTSGAL KCAACNCHRN FHRREVEGEN RLRGVYSAKV VQDLQLASLL 180 FDMPFSVADH CENGTLVDSL ALCQLTSEPG LCW

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF676897	0.0	EF676897.1 Picea sitchensis clone WS02757_I03 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	B8LM89	1e-116	B8LM89_PICSI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP91	16	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02540.1	2e-27	homeobox protein 21