PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_91369g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family LBD
Protein Properties Length: 260aa    MW: 28277.1 Da    PI: 7.4338
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_91369g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26088.87e-28298192
         DUF260  1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92
                   +C++C+vlr++C+++C+l+p++     +++q++++ +++k++G++ +++l+++ pe+ r+++++sl+yeA+ r+ +Pv+G+vg+ +++++  +q+ +
  MA_91369g0010  2 SCNGCRVLRKGCSESCILRPCLhwistAESQANATIFLAKFYGRAGLTNLISNGPEHLRPAIFRSLLYEACGRMVNPVHGSVGLAWSGNWAECQAGV 98
                   6*********************9999778899**********************************************************9998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.2091107IPR004883Lateral organ boundaries, LOB
PfamPF031952.1E-22296IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSESCILR PCLHWISTAE SQANATIFLA KFYGRAGLTN LISNGPEHLR  60
PAIFRSLLYE ACGRMVNPVH GSVGLAWSGN WAECQAGVDS ILRGSFLAVP QGNFMFPDRE  120
NIVPMKPMAV PGLRRSVKAR GRLKGLWHAK PKRKEGELAV ICNHIHSSSI SDDGGDVTNA  180
VQNSADNGIF NEKFIERYST SNSGQEHDEL LAADEAEMEY CHDLCNLKAT QPEAAYKTVG  240
LELTLGSQCS TSPAHNLSAV
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1009870.0BT100987.1 Picea glauca clone GQ0062_D21 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007044347.12e-60PREDICTED: LOB domain-containing protein 42
TrEMBLA0A061ED634e-59A0A061ED63_THECC; LOB domain-containing protein 42
STRINGEOY001797e-60(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.11e-59LOB domain-containing protein 42