PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_922309g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 206aa    MW: 22858.3 Da    PI: 7.8859
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_922309g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.41.3e-16116167256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GV  ++ +g++ AeIrdp +  k +r++lg+f+taeeAa a+++a+ +++g+
  MA_922309g0010 116 PYRGVKERP-WGKFGAEIRDPAK--KGARVWLGTFDTAEEAALAYDRAAYRIRGA 167
                     59***9777.**********954..34*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.9E-30116174IPR001471AP2/ERF domain
SMARTSM003801.3E-32116180IPR001471AP2/ERF domain
PROSITE profilePS5103223.709116174IPR001471AP2/ERF domain
PRINTSPR003678.2E-11117128IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-22117175IPR016177DNA-binding domain
PfamPF008479.6E-11117166IPR001471AP2/ERF domain
CDDcd000184.28E-30117174No hitNo description
PRINTSPR003678.2E-11140156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
TTMDPAGEVN TSMNINMRML ELIRHHLLEV DDEIDIAEGN YPSFSFCPTG SGTGDCFLAS  60
NTDSCQNSSA RSTSEGNENE FTQQHYPSSY CYSYSVNAKP HEKENTGEKK QSRRRPYRGV  120
KERPWGKFGA EIRDPAKKGA RVWLGTFDTA EEAALAYDRA AYRIRGARAM LNFPLAIASN  180
SEDGSAVGHM AQKRKRRRGS CGGTLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-31117179668ATERF1
3gcc_A1e-31117179668ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1191197QKRKRRR
2192197KRKRRR
3193197RKRRR
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1. Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2), whereas induction by wounding does not need EIN2. Induction by salicylic acid (SA) seems to be independent of PAD4 and NPR1. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotO803375e-32EF100_ARATH; Ethylene-responsive transcription factor 1A
TrEMBLA0A023ZYJ76e-75A0A023ZYJ7_9SPER; Ethylene responsive factor 1-like protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.11e-23ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]