PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_9241385g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HD-ZIP
Protein Properties Length: 328aa    MW: 37383.1 Da    PI: 5.8472
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_9241385g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox551.4e-1763113656
                      S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++  q++ Le+ Fe  ++++  ++ +LAk lgL+ rq++vWFqNrRa++k
  MA_9241385g0010  63 RLSFGQVKMLEKSFELRNKLDPVQKMQLAKALGLQPRQISVWFQNRRARWK 113
                      455679********************************************9 PP
2HD-ZIP_I/II116.61.5e-3759151193
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      ekk+rls  qvk+LE+sFe ++kL+p +K++la++Lglqprq+ vWFqnrRAR+ktkqlEkd++aLk++yd+lk++ ++L +++++ ++e+++
  MA_9241385g0010  59 EKKKRLSFGQVKMLEKSFELRNKLDPVQKMQLAKALGLQPRQISVWFQNRRARWKTKQLEKDFNALKQEYDTLKRNYDTLLQQNRQFKAEVQR 151
                      69**************************************************************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.19E-1949117IPR009057Homeodomain-like
SMARTSM003894.7E-1559119IPR001356Homeobox domain
PROSITE profilePS5007115.87259115IPR001356Homeobox domain
CDDcd000861.41E-1460116No hitNo description
PfamPF000467.8E-1563113IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-1868114IPR009057Homeodomain-like
PRINTSPR000311.1E-58695IPR000047Helix-turn-helix motif
PROSITE patternPS00027090113IPR017970Homeobox, conserved site
PRINTSPR000311.1E-595111IPR000047Helix-turn-helix motif
PfamPF021831.1E-10115151IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MIASCTSVEL QGARSLTRNE CENTRKRSMS SYSYSGAVYL SDHDIGEEDG SDECLHFGEK  60
KKRLSFGQVK MLEKSFELRN KLDPVQKMQL AKALGLQPRQ ISVWFQNRRA RWKTKQLEKD  120
FNALKQEYDT LKRNYDTLLQ QNRQFKAEVQ RQGTELEKND GSSKVRVSEI EPRKNSENSV  180
PKVTNSPMEL SVKSEISIKC TEQQRYCKYP MNTQEQEGEC CSIMTEAASS IFNIDCPRTM  240
EISESPGVPQ MAAAAANRSS PTLVVEGLST GEQVGAGGLK TPLQGLHEWY CQPKVEVDQI  300
TDEETQCNLF YSFEEQSAMM LCEYWHAR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107115RRARWKTKQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1168810.0BT116881.1 Picea glauca clone GQ03808_I05 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NQH81e-147A9NQH8_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.18e-42homeobox 3