PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_927067g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

LBD

Protein Properties

Length: 210aa MW: 22966.8 Da PI: 6.3411

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_927067g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	116.8	1.4e-36	42	140	3	101
DUF260 3 aaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 aa k +r+C ++Cvlapyfp ++p+kfa vh +FGasn++++l+++ +e+r+da+ss+vyeA+ar+rdP+yG++gv+ +lqqq++ l+++la++ MA_927067g0010 42 AAGKGSKRRCGDKCVLAPYFPPNDPQKFASVHTVFGASNIIRILQDVGTEHRDDAVSSMVYEARARLRDPIYGCAGVVCQLQQQVCDLQSQLATA 136 56677899**************************************************************************************9 PP DUF260 98 keel 101 ++++ MA_927067g0010 137 QAQI 140 9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.289	39	140	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.9E-36	42	137	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MASMTVLSPN IFLANPDLLG ARGDSPPTRG DGRSHHSKSF AAAGKGSKRR CGDKCVLAPY 60 FPPNDPQKFA SVHTVFGASN IIRILQDVGT EHRDDAVSSM VYEARARLRD PIYGCAGVVC 120 QLQQQVCDLQ SQLATAQAQI LNLHCQQENL LPFLTASISS SRKGGETDDY DYNEPLGSSW 180 TDSPASQVTY GEKDINFLLQ EMFMWSSYGK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-35	42	156	13	131	LOB family transfactor Ramosa2.1
5ly0_B	9e-35	42	156	13	131	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT104771	0.0	BT104771.1 Picea glauca clone GQ02814_K04 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019256526.1	1e-51	PREDICTED: LOB domain-containing protein 1-like
Swissprot	Q9LQR0	6e-44	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A1J6HW41	2e-50	A0A1J6HW41_NICAT; Lob domain-containing protein 11
TrEMBL	A0A2Z7BKX0	1e-50	A0A2Z7BKX0_9LAMI; LOB domain-containing protein 11-like
STRING	XP_009611728.1	1e-50	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP60	16	318

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	2e-38	LOB domain-containing protein 1