PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_93552g0020

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

SAP

Protein Properties

Length: 236aa MW: 25356.5 Da PI: 5.5581

Description

SAP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_93552g0020	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SAP	110.8	1.4e-34	46	235	277	453
SAP 277 eelvfvGGsltdPeavmGWhmlteltelvGrvrvteretavaCtslrlvvfdlrnqgv.vlreeeerrGlivssldasneayvvvdsrGvatvrrv 371 elvf GG +tdP+a++GW +lte +e + rvr+ + + t++++ +fdl +g+ v eee+ +G+iv s+da+ ++++ ++G+a++ ++ MA_93552g0020 46 RELVFNGGDITDPDALRGWRLLTEQAERIARVRIGGDSLLLLATRSKVAAFDLETHGNrVSIEEETDEGIIVESVDANRGRFLAASNNGNARICQI 141 689*************************************************9965267778888**********************998 PP SAP 372 e.nleevcrfrv..........rg...aqrgvlgCvnggyalvyaggvlrvWeiekkegylyslrervgevnalvaddrhvavsssdgtihlldfg 453 +l++vc f + +g +r+++g +n+ a + + gv+ +W+ + + ly l e++g+v lvad+ hva ++ d+ ihl+ f MA_93552g0020 142 GtTLKNVCTFPLddlggadnnsSGsnnNHRKIVGTLNTWLAFISIDGVVHAWDAYSGA-GLYRLVEQIGDVFDLVADNEHVAGCA-DNGIHLWSFR 235 6267**87333333332212445689********************9977.79*****************997.5669**96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF50978	5.04E-8	77	233	IPR017986	WD40-repeat-containing domain
Gene3D	G3DSA:2.130.10.10	2.1E-6	90	234	IPR015943	WD40/YVTN repeat-like-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MCGVHTRAKL GTTAHWSTSP VAIGIGWACM PGSPVTPVIY GMPARRELVF NGGDITDPDA 60 LRGWRLLTEQ AERIARVRIG GDSLLLLATR SKVAAFDLET HGNRVSIEEE TDEGIIVESV 120 DANRGRFLAA SNNGNARICQ IGTTLKNVCT FPLDDLGGAD NNSSGSNNNH RKIVGTLNTW 180 LAFISIDGVV HAWDAYSGAG LYRLVEQIGD VFDLVADNEH VAGCADNGIH LWSFRA

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP9756	9	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35770.1	2e-26	SAP family protein