PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_938274g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 198aa    MW: 21876.3 Da    PI: 7.0784
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_938274g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.4e-19103154256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     +y+GVr+++ +g+++AeIrdp +  k +r++lg+f taeeAa a+++a+ +++g+
  MA_938274g0010 103 HYRGVRQRP-WGKFAAEIRDPAK--KGARVWLGTFSTAEEAALAYDRAAFRIRGA 154
                     7********.**********954..34*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.8E-32102161IPR001471AP2/ERF domain
PfamPF008471.8E-13103153IPR001471AP2/ERF domain
SMARTSM003809.7E-38103167IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-23103162IPR016177DNA-binding domain
PROSITE profilePS5103224.276103161IPR001471AP2/ERF domain
CDDcd000183.78E-30103161No hitNo description
PRINTSPR003673.2E-11104115IPR001471AP2/ERF domain
PRINTSPR003673.2E-11127143IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MDVAEASLNI NMLEFIRHHL LEGEDDVDII DIGGNSSSIS SSLSSSSSSS ISISENDESE  60
FTQQNYSSPS SACSVIRRAE TFKVKPRAHE EENREMKKSW ARHYRGVRQR PWGKFAAEIR  120
DPAKKGARVW LGTFSTAEEA ALAYDRAAFR IRGARALVNF PLAFASNSEN GSAVGHKVQK  180
RKRGNDEGEV AEGLVLFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-34102162464ATERF1
3gcc_A1e-34102162464ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Involved in disease resistance pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) and Alternaria brassicicola (locally and systemically). Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2) while wounding induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010494952.11e-40PREDICTED: ethylene-responsive transcription factor 2-like
SwissprotO803382e-35EF101_ARATH; Ethylene-responsive transcription factor 2
TrEMBLA9NMA34e-73A9NMA3_PICSI; Uncharacterized protein
STRINGXP_010494952.15e-40(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.18e-27ethylene responsive element binding factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]