PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_9412105g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

LBD

Protein Properties

Length: 197aa MW: 21934.6 Da PI: 8.9555

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_9412105g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.6	7.6e-42	43	142	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq ++l++el MA_9412105g0010 43 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLLEVPESQRADAANSLVYEANVRLRDPVYGCMGAISSLQQQAQSLQSEL 136 7********************************************************************************************* PP DUF260 95 allkee 100 +++++e MA_9412105g0010 137 NSVRAE 142 *99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.416	42	143	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-41	43	140	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MSRERENFEN FSRRASFKQL ADADRMGRRQ ILGPPGTLNT ITPCAACKLL RRRCAQECPF 60 SPYFSPHEPQ KFASVHKVFG ASNVSKMLLE VPESQRADAA NSLVYEANVR LRDPVYGCMG 120 AISSLQQQAQ SLQSELNSVR AEIMRYKFRS EAAAMHHQPP GQSSHQASMM PSSSAVYSQG 180 SASTDYTAMN DHSNYYG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-45	35	146	3	114	LOB family transfactor Ramosa2.1
5ly0_B	1e-45	35	146	3	114	LOB family transfactor Ramosa2.1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00283	DAP	Transfer from AT2G30340	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT102233	0.0	BT102233.1 Picea glauca clone GQ0171_H05 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018821727.1	3e-90	PREDICTED: LOB domain-containing protein 15-like
Swissprot	Q8L5T5	1e-74	LBD15_ARATH; LOB domain-containing protein 15
Swissprot	Q9AT61	3e-74	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A3S3NG72	5e-89	A0A3S3NG72_9MAGN; LOB domain-containing protein 15
STRING	XP_007137607.1	4e-88	(Phaseolus vulgaris)
STRING	cassava4.1_031813m	3e-88	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP60	16	318

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	5e-68	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288] Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]