PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_94228g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 209aa    MW: 23496.3 Da    PI: 8.7551
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_94228g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.7e-19655255
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                   +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + g
  MA_94228g0010  6 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARMMCG 55
                   69******9.**********8.....334**********************98866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.66E-34563No hitNo description
SuperFamilySSF541714.51E-21664IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.7E-34663IPR001471AP2/ERF domain
PROSITE profilePS5103221.246663IPR001471AP2/ERF domain
SMARTSM003806.9E-40669IPR001471AP2/ERF domain
PfamPF008475.4E-12655IPR001471AP2/ERF domain
PRINTSPR003673.6E-11718IPR001471AP2/ERF domain
PRINTSPR003673.6E-112945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MARPQRYRGV RQRHWGSWVS EIRHPLLKTR IWLGTFETAE DAARAYDEAA RMMCGPRART  60
NFPFNPNAPQ SPSSKVLSST LTAKLHRCYM ASMQGPRSGS SKKDSMARAD KNNNIHSGNQ  120
SLTCLRLDNE RSNNIGIWQK KSGSKQSESN WLMKLELDHD QHGNSTLKRE TDDDIAQMIE  180
ELLDCGSLEI CSPIASADSN INSAESMLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-18267167ATERF1
3gcc_A4e-18267167ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00526DAPTransfer from AT5G25190Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0833190.0EF083319.1 Picea sitchensis clone WS0288_A15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021890671.11e-72ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW54e-61ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA9NPV71e-155A9NPV7_PICSI; Uncharacterized protein
STRINGevm.model.supercontig_127.45e-72(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.12e-50ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]