PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_9427942g0010
Common NameWOX3
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family WOX
Protein Properties Length: 159aa    MW: 18412.8 Da    PI: 8.3312
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_9427942g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.82.8e-211978357
                     --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     +R+++t+eql +Lee+++   r+p+a+++++++++l    +++ ++V++WFqN++a++++
  MA_9427942g0010 19 TRWNPTPEQLMILEEMYRGgIRTPNADQIQQITAHLalygKIEGKNVFYWFQNHKARDRQ 78
                     8*****************99*************************************996 PP
2Wus_type_Homeobox121.43.7e-391779264
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       a+tRW+PtpeQ++iLee+y+ G+rtPn+++iq+ita+L+ yGkie+kNVfyWFQN+kaR+rqk
    MA_9427942g0010 17 ATTRWNPTPEQLMILEEMYRGGIRTPNADQIQQITAHLALYGKIEGKNVFYWFQNHKARDRQK 79
                       689***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.2521479IPR001356Homeobox domain
SuperFamilySSF466892.65E-111684IPR009057Homeodomain-like
SMARTSM003897.2E-61683IPR001356Homeobox domain
CDDcd000861.83E-41979No hitNo description
PfamPF000466.2E-191978IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.7E-81978IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009908Biological Processflower development
GO:0009943Biological Processadaxial/abaxial axis specification
GO:0009947Biological Processcentrolateral axis specification
GO:0010865Biological Processstipule development
GO:0048513Biological Processanimal organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
VVSRARIRVP TAMPQPATTR WNPTPEQLMI LEEMYRGGIR TPNADQIQQI TAHLALYGKI  60
EGKNVFYWFQ NHKARDRQKL RRKMESKQEP KRSTFEDESA LDINNGWRLS TLDSRDECGN  120
SFNCGSVEEF DCEIDTVHEI SRRARPLKTL ELFPTCSGL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17883KLRRKM
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFM8821580.0FM882158.1 Pinus sylvestris mRNA for putative wuschel homeobox protein WOX3 (wox3 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006828230.12e-42WUSCHEL-related homeobox 3
RefseqXP_008783634.13e-42WUSCHEL-related homeobox 3B-like
TrEMBLR9R8B41e-116R9R8B4_PICAB; WUSCHEL homeobox protein WOX3
STRINGAquca_046_00011.18e-43(Aquilegia coerulea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP55801121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.16e-41WOX family protein
Publications ? help Back to Top
  1. Hedman H,Zhu T,von Arnold S,Sohlberg JJ
    Analysis of the WUSCHEL-RELATED HOMEOBOX gene family in the conifer picea abies reveals extensive conservation as well as dynamic patterns.
    BMC Plant Biol., 2013. 13: p. 89
    [PMID:23758772]